miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20531 5' -50.2 NC_004688.1 + 96798 0.66 0.987884
Target:  5'- --cGCCCGG--UGCAGgugAUCCGUCCa -3'
miRNA:   3'- uuuCGGGCUuaAUGUCa--UAGGUGGGc -5'
20531 5' -50.2 NC_004688.1 + 100867 0.66 0.986205
Target:  5'- -cGGCUgGAucuaaagGCGGUG-CCGCCCGa -3'
miRNA:   3'- uuUCGGgCUuaa----UGUCAUaGGUGGGC- -5'
20531 5' -50.2 NC_004688.1 + 48559 0.66 0.983358
Target:  5'- aAGGGCCCGugggggaacgucgaGGUGuUCCGCCCGu -3'
miRNA:   3'- -UUUCGGGCuuaaug--------UCAU-AGGUGGGC- -5'
20531 5' -50.2 NC_004688.1 + 81833 0.66 0.980087
Target:  5'- cGAGGCUCcuuGGAUUGCGGcaagGUCCGCCa- -3'
miRNA:   3'- -UUUCGGG---CUUAAUGUCa---UAGGUGGgc -5'
20531 5' -50.2 NC_004688.1 + 55038 0.68 0.961775
Target:  5'- -uGGCCCGcaaguggucggguGAgaGCAGUGUuCCGCCCc -3'
miRNA:   3'- uuUCGGGC-------------UUaaUGUCAUA-GGUGGGc -5'
20531 5' -50.2 NC_004688.1 + 46191 0.68 0.957523
Target:  5'- -cAGCCCcaccggcCAGcUGUCCGCCCGg -3'
miRNA:   3'- uuUCGGGcuuaau-GUC-AUAGGUGGGC- -5'
20531 5' -50.2 NC_004688.1 + 14430 0.69 0.940392
Target:  5'- uGGGCCCGAagGUUACGGUcgCCGgaCGc -3'
miRNA:   3'- uUUCGGGCU--UAAUGUCAuaGGUggGC- -5'
20531 5' -50.2 NC_004688.1 + 44757 0.7 0.891475
Target:  5'- -uGGCCgCGA---ACAGUAUCCAgCCCu -3'
miRNA:   3'- uuUCGG-GCUuaaUGUCAUAGGU-GGGc -5'
20531 5' -50.2 NC_004688.1 + 57557 0.72 0.835015
Target:  5'- --cGCCCGucg-GCAGUAaacccaUCCACCUGa -3'
miRNA:   3'- uuuCGGGCuuaaUGUCAU------AGGUGGGC- -5'
20531 5' -50.2 NC_004688.1 + 87652 0.72 0.797911
Target:  5'- --cGCCCGAAccACGGUcgGUCgGCCCGc -3'
miRNA:   3'- uuuCGGGCUUaaUGUCA--UAGgUGGGC- -5'
20531 5' -50.2 NC_004688.1 + 85464 1.08 0.007381
Target:  5'- gAAAGCCCGAAUUACAGUAUCCACCCGg -3'
miRNA:   3'- -UUUCGGGCUUAAUGUCAUAGGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.