miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20535 5' -64.4 NC_004688.1 + 10774 0.68 0.402803
Target:  5'- cUCGuCGACCGagaCAGcGGCCUGaUCCAGGa -3'
miRNA:   3'- -GGC-GCUGGC---GUC-CCGGGCgAGGUCCc -5'
20535 5' -64.4 NC_004688.1 + 89888 0.68 0.402803
Target:  5'- gCgGCGGCuCGCcgccuggccGGGGUCCGCUUCcguggccgacGGGGa -3'
miRNA:   3'- -GgCGCUG-GCG---------UCCCGGGCGAGG----------UCCC- -5'
20535 5' -64.4 NC_004688.1 + 68583 0.68 0.394697
Target:  5'- cCCGCGAUCGUucucAGcGCuuGCUCUAGuGGc -3'
miRNA:   3'- -GGCGCUGGCG----UCcCGggCGAGGUC-CC- -5'
20535 5' -64.4 NC_004688.1 + 15036 0.68 0.378805
Target:  5'- gUGCGGCCcgaAGGguaaGCCCGCUCUggcGGGGu -3'
miRNA:   3'- gGCGCUGGcg-UCC----CGGGCGAGG---UCCC- -5'
20535 5' -64.4 NC_004688.1 + 42891 0.68 0.363348
Target:  5'- cCCGUGACucgacaccuCGUAGaGGCCCuCguagCCGGGGg -3'
miRNA:   3'- -GGCGCUG---------GCGUC-CCGGGcGa---GGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 24215 0.69 0.348333
Target:  5'- gUCGCGcCCGUGGGGaCCGUUgccggugcCCGGGGc -3'
miRNA:   3'- -GGCGCuGGCGUCCCgGGCGA--------GGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 19882 0.7 0.30599
Target:  5'- uCCGcCGuucaCGUAGGcGCCCGCcgUCAGGGu -3'
miRNA:   3'- -GGC-GCug--GCGUCC-CGGGCGa-GGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 67457 0.7 0.280018
Target:  5'- -aGCGGCUGCAGGGCCCGaccugUCCc--- -3'
miRNA:   3'- ggCGCUGGCGUCCCGGGCg----AGGuccc -5'
20535 5' -64.4 NC_004688.1 + 35285 0.71 0.25583
Target:  5'- cCCGC-ACCcaaauGCGGGuauaGCCCGCggCCGGGGg -3'
miRNA:   3'- -GGCGcUGG-----CGUCC----CGGGCGa-GGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 3270 0.71 0.25583
Target:  5'- aCGcCGAgUCGCGGGGCaaaguacaacuCCGCgCCAGGGa -3'
miRNA:   3'- gGC-GCU-GGCGUCCCG-----------GGCGaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 61830 0.71 0.233381
Target:  5'- gCUGCGgcgguaguuGCCGCGGGGCUCGUcggagcugcgggUCCAGcGGc -3'
miRNA:   3'- -GGCGC---------UGGCGUCCCGGGCG------------AGGUC-CC- -5'
20535 5' -64.4 NC_004688.1 + 9840 0.72 0.208164
Target:  5'- cCCGCGGCUGCcguagcuacguccgcGGGCCCGC-CCGGa- -3'
miRNA:   3'- -GGCGCUGGCGu--------------CCCGGGCGaGGUCcc -5'
20535 5' -64.4 NC_004688.1 + 17044 0.73 0.184451
Target:  5'- cUCGCcGCCGUuuGGGCCCGa-CCAGGGc -3'
miRNA:   3'- -GGCGcUGGCGu-CCCGGGCgaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 27787 0.74 0.167553
Target:  5'- aCGUGACCGUguAGGGCCCGC-CCGa-- -3'
miRNA:   3'- gGCGCUGGCG--UCCCGGGCGaGGUccc -5'
20535 5' -64.4 NC_004688.1 + 5083 0.74 0.163551
Target:  5'- uUCGCGACCGuCAGGGugcggugcuCCCGCUUCAcGGc -3'
miRNA:   3'- -GGCGCUGGC-GUCCC---------GGGCGAGGUcCC- -5'
20535 5' -64.4 NC_004688.1 + 1943 0.74 0.14623
Target:  5'- gCCGCGGCCGUAGGGCaugaaguucacccggCCaaaguccccGC-CCAGGGa -3'
miRNA:   3'- -GGCGCUGGCGUCCCG---------------GG---------CGaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 26066 0.77 0.104916
Target:  5'- gCCGC-ACCGCccgcagcaccgGGGGCaCgGCUCCGGGGa -3'
miRNA:   3'- -GGCGcUGGCG-----------UCCCG-GgCGAGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 87925 1 0.002135
Target:  5'- uCCGCGACCGCA-GGCCCGCUCCAGGGa -3'
miRNA:   3'- -GGCGCUGGCGUcCCGGGCGAGGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.