Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 88766 | 1.11 | 0.001079 |
Target: 5'- cUCUCCCCCGUGCACAGGGCAUGAUGGa -3' miRNA: 3'- -AGAGGGGGCACGUGUCCCGUACUACC- -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 31618 | 0.75 | 0.295007 |
Target: 5'- cCUCCCCCGUgGUGgGGGGCGccgaaGAUGGc -3' miRNA: 3'- aGAGGGGGCA-CGUgUCCCGUa----CUACC- -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 48898 | 0.73 | 0.387079 |
Target: 5'- uUCgcggUCCCUGUGcCGCGGGGCuccGGUGGa -3' miRNA: 3'- -AGa---GGGGGCAC-GUGUCCCGua-CUACC- -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 92366 | 0.71 | 0.486515 |
Target: 5'- uUCgCCCuCCGUGgGCGGGGCGggcaGUGGu -3' miRNA: 3'- -AGaGGG-GGCACgUGUCCCGUac--UACC- -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 9875 | 0.7 | 0.535562 |
Target: 5'- --aCCCCCaGUGcCAgGGGGCAUGAg-- -3' miRNA: 3'- agaGGGGG-CAC-GUgUCCCGUACUacc -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 51634 | 0.68 | 0.689104 |
Target: 5'- --aCUCCCGcUGC-CAGGGUAcgcgGGUGGg -3' miRNA: 3'- agaGGGGGC-ACGuGUCCCGUa---CUACC- -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 20429 | 0.67 | 0.729389 |
Target: 5'- gUCaUCUCCGUGCcguccucguGCAGGGCGccgaGGUGGu -3' miRNA: 3'- -AGaGGGGGCACG---------UGUCCCGUa---CUACC- -5' |
|||||||
20537 | 3' | -57.6 | NC_004688.1 | + | 96155 | 0.66 | 0.754877 |
Target: 5'- cCUCagcaUCCGgccaccgcaagcgGCGCAGGGCAUGAa-- -3' miRNA: 3'- aGAGg---GGGCa------------CGUGUCCCGUACUacc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home