Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20537 | 5' | -62.8 | NC_004688.1 | + | 11293 | 0.66 | 0.537465 |
Target: 5'- cGGCC-CgGgUCU-CCUGCAGGGcGCGc -3' miRNA: 3'- -CCGGcGgCgAGAuGGGCGUCCCuCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 100591 | 0.66 | 0.527781 |
Target: 5'- cGCUGgCGCUCa--CCGCccuGGGGGGCu -3' miRNA: 3'- cCGGCgGCGAGaugGGCG---UCCCUCGu -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 531 | 0.66 | 0.508616 |
Target: 5'- uGUCGCCGggCUugCCcCAGGuGAGCu -3' miRNA: 3'- cCGGCGGCgaGAugGGcGUCC-CUCGu -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 19882 | 0.66 | 0.499144 |
Target: 5'- -uCCGCCGUUCacguaggcGCCCGCcgucAGGGuGCGg -3' miRNA: 3'- ccGGCGGCGAGa-------UGGGCG----UCCCuCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 83357 | 0.66 | 0.499144 |
Target: 5'- cGGCUGCUGCUCcucgucgaUAUCCaccCGGGGAGg- -3' miRNA: 3'- -CCGGCGGCGAG--------AUGGGc--GUCCCUCgu -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 51958 | 0.66 | 0.499144 |
Target: 5'- uGCCGCCGCUgCUGCgguuguagCCG-AGGGGGa- -3' miRNA: 3'- cCGGCGGCGA-GAUG--------GGCgUCCCUCgu -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 53522 | 0.67 | 0.48044 |
Target: 5'- cGGgCGCCGCU--ACCCG-AGGG-GCu -3' miRNA: 3'- -CCgGCGGCGAgaUGGGCgUCCCuCGu -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 92953 | 0.67 | 0.462086 |
Target: 5'- cGGCCGCgGCgauUCUGCUucggaGUcGGGGGCGu -3' miRNA: 3'- -CCGGCGgCG---AGAUGGg----CGuCCCUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 685 | 0.67 | 0.462086 |
Target: 5'- gGGCUGCCGUccacaugagCcGCCCGgAGGGcGCGc -3' miRNA: 3'- -CCGGCGGCGa--------GaUGGGCgUCCCuCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 84218 | 0.67 | 0.453047 |
Target: 5'- cGGCUGCCGCUUcACUgGaAGGGuGUAu -3' miRNA: 3'- -CCGGCGGCGAGaUGGgCgUCCCuCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 98831 | 0.67 | 0.444106 |
Target: 5'- cGGcCCGCgGCgacaaagaggaCUGCCUagucaGCGGGGGGCGg -3' miRNA: 3'- -CC-GGCGgCGa----------GAUGGG-----CGUCCCUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 882 | 0.67 | 0.435265 |
Target: 5'- cGCUGCCGCgCUgacgguugcACgCCGCGuGGAGCAg -3' miRNA: 3'- cCGGCGGCGaGA---------UG-GGCGUcCCUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 43736 | 0.67 | 0.426527 |
Target: 5'- gGGCCuGCCuGCguaGCCCGCGGGccagGGGCGc -3' miRNA: 3'- -CCGG-CGG-CGagaUGGGCGUCC----CUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 89372 | 0.68 | 0.384451 |
Target: 5'- cGCCcuuGCUGUUCU-CCCaGcCGGGGAGCAu -3' miRNA: 3'- cCGG---CGGCGAGAuGGG-C-GUCCCUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 93422 | 0.69 | 0.368409 |
Target: 5'- uGGCuCGCCGUUCUcgaacggcuGgUCGCAGGuaGAGCAc -3' miRNA: 3'- -CCG-GCGGCGAGA---------UgGGCGUCC--CUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 73496 | 0.69 | 0.360561 |
Target: 5'- uGCaCGCCGCgc--CCUGCGGcGGGGCAg -3' miRNA: 3'- cCG-GCGGCGagauGGGCGUC-CCUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 59297 | 0.69 | 0.345219 |
Target: 5'- uGGCCGCCGCcggCUACggCCGgaaAGaGGAGUAc -3' miRNA: 3'- -CCGGCGGCGa--GAUG--GGCg--UC-CCUCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 96824 | 0.69 | 0.337725 |
Target: 5'- aGGUCGgCGUUCUGCCCGUGGuucggcgcccGGuGCAg -3' miRNA: 3'- -CCGGCgGCGAGAUGGGCGUC----------CCuCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 67720 | 0.71 | 0.284673 |
Target: 5'- aGGCCGCgucguacucgCGCUCgGCCCGCuuguacuccccgaagAGGGuGCGc -3' miRNA: 3'- -CCGGCG----------GCGAGaUGGGCG---------------UCCCuCGU- -5' |
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20537 | 5' | -62.8 | NC_004688.1 | + | 103664 | 0.71 | 0.269346 |
Target: 5'- cGGCCgGCgGCUCUGCCgaGCucguGGuGAGCGu -3' miRNA: 3'- -CCGG-CGgCGAGAUGGg-CGu---CC-CUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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