Results 1 - 20 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 4606 | 0.66 | 0.583625 |
Target: 5'- cCGCaCGCGGCGGCCa-GGUCaaucgcUUCCUg -3' miRNA: 3'- -GCG-GCGCCGUCGGaaCCGGaa----GAGGA- -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 6781 | 0.69 | 0.371002 |
Target: 5'- aGCCGCcGCAgGCCUgGGCCU-CUUCg -3' miRNA: 3'- gCGGCGcCGU-CGGAaCCGGAaGAGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 9530 | 0.66 | 0.567521 |
Target: 5'- -uCUGCGGCgacaaugucggcaagAGCCUUggcGGCCUgCUCCUu -3' miRNA: 3'- gcGGCGCCG---------------UCGGAA---CCGGAaGAGGA- -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 9583 | 0.71 | 0.283619 |
Target: 5'- aCGCCGCGGUguaGGCCUcgguugccgcccggaGGUCUUCUUCg -3' miRNA: 3'- -GCGGCGCCG---UCGGAa--------------CCGGAAGAGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 10020 | 0.66 | 0.573547 |
Target: 5'- cCGCCGCGcGCAGUgcgcgcaguuCUUccaGGUgCUUCUCCa -3' miRNA: 3'- -GCGGCGC-CGUCG----------GAA---CCG-GAAGAGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 10074 | 0.69 | 0.371002 |
Target: 5'- gCGCCGUGGCGaucGCCUgacgcucGGCCUUCa--- -3' miRNA: 3'- -GCGGCGCCGU---CGGAa------CCGGAAGagga -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 17749 | 0.68 | 0.470376 |
Target: 5'- cCGcCCGCGGCGGCgCUUaggagcggcuucgacGGCCUgCUCg- -3' miRNA: 3'- -GC-GGCGCCGUCG-GAA---------------CCGGAaGAGga -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 20079 | 0.79 | 0.082144 |
Target: 5'- gGCCGCGGgAGCUUUcuccucGGCCUUUUCCUg -3' miRNA: 3'- gCGGCGCCgUCGGAA------CCGGAAGAGGA- -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 22857 | 0.67 | 0.494903 |
Target: 5'- cCGCCGCGGCGauuacggucuucGCgCUUGcGCCgcUUCUCa- -3' miRNA: 3'- -GCGGCGCCGU------------CG-GAAC-CGG--AAGAGga -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 23173 | 0.66 | 0.573547 |
Target: 5'- gCGCCGCcugcugGGCGGCCggagagagggauUggagGGCCUcggcgaacuUCUCCg -3' miRNA: 3'- -GCGGCG------CCGUCGG------------Aa---CCGGA---------AGAGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 24571 | 0.66 | 0.553523 |
Target: 5'- uCGagCGCGGCGcGCCgaa-CCUUCUCCUg -3' miRNA: 3'- -GCg-GCGCCGU-CGGaaccGGAAGAGGA- -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 25740 | 0.67 | 0.514158 |
Target: 5'- cCGCCGgGGCcGCCUUgggGGCCg---CCg -3' miRNA: 3'- -GCGGCgCCGuCGGAA---CCGGaagaGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 49184 | 0.66 | 0.563512 |
Target: 5'- -aCUGC-GCAGCCUUGGaCUUCUCg- -3' miRNA: 3'- gcGGCGcCGUCGGAACCgGAAGAGga -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 54401 | 0.66 | 0.563512 |
Target: 5'- gGCC-CGGcCGGUCUcGGCgaUCUCCUc -3' miRNA: 3'- gCGGcGCC-GUCGGAaCCGgaAGAGGA- -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 60812 | 0.66 | 0.573547 |
Target: 5'- gGCCGCGGCGGUCgccaaUGGUCcaggCcCCg -3' miRNA: 3'- gCGGCGCCGUCGGa----ACCGGaa--GaGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 66608 | 0.68 | 0.451938 |
Target: 5'- uGUCGgGGuCGGCCacgaauuccucguagUaGGCCUUCUCCg -3' miRNA: 3'- gCGGCgCC-GUCGG---------------AaCCGGAAGAGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 77322 | 0.68 | 0.448298 |
Target: 5'- uCGCCgcagguGCGGCAcaccuugcgcGCCUUGGCUaUCUCg- -3' miRNA: 3'- -GCGG------CGCCGU----------CGGAACCGGaAGAGga -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 79474 | 0.7 | 0.355102 |
Target: 5'- uCGCCGCGGUcucGGCUgauaGGCCacccgCUCCg -3' miRNA: 3'- -GCGGCGCCG---UCGGaa--CCGGaa---GAGGa -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 81345 | 0.69 | 0.412821 |
Target: 5'- gCGCUccuugGCGGgAGCCUUGGCCUgguaCUUg- -3' miRNA: 3'- -GCGG-----CGCCgUCGGAACCGGAa---GAGga -5' |
|||||||
20539 | 3' | -61.3 | NC_004688.1 | + | 84082 | 0.67 | 0.533711 |
Target: 5'- uCGCUGCGGUGGCCgcgGaGCUUgagggCUCUg -3' miRNA: 3'- -GCGGCGCCGUCGGaa-C-CGGAa----GAGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home