Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20542 | 5' | -56.6 | NC_004688.1 | + | 11302 | 0.66 | 0.79559 |
Target: 5'- aCAgguuCUCGGCCCggguCUCCugcaGGGCGCg- -3' miRNA: 3'- aGUaau-GAGUCGGG----GAGG----UCCGCGaa -5' |
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20542 | 5' | -56.6 | NC_004688.1 | + | 58957 | 0.66 | 0.74693 |
Target: 5'- -----cCUCGGCUggagCCUCCGGGUGCg- -3' miRNA: 3'- aguaauGAGUCGG----GGAGGUCCGCGaa -5' |
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20542 | 5' | -56.6 | NC_004688.1 | + | 36924 | 0.68 | 0.68507 |
Target: 5'- ---cUACcCGGCCaccguCUCCAGGCGCg- -3' miRNA: 3'- aguaAUGaGUCGGg----GAGGUCCGCGaa -5' |
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20542 | 5' | -56.6 | NC_004688.1 | + | 93171 | 0.68 | 0.674536 |
Target: 5'- gUCAUUcACUCGGacuCCCCgaggUCUAGGCGCc- -3' miRNA: 3'- -AGUAA-UGAGUC---GGGG----AGGUCCGCGaa -5' |
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20542 | 5' | -56.6 | NC_004688.1 | + | 43351 | 0.69 | 0.610876 |
Target: 5'- uUUAUUGg-CAGCCCCUgCuGGCGCa- -3' miRNA: 3'- -AGUAAUgaGUCGGGGAgGuCCGCGaa -5' |
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20542 | 5' | -56.6 | NC_004688.1 | + | 10011 | 0.7 | 0.517008 |
Target: 5'- gCAgUGCgcgCAGUUCUUCCAGGUGCUUc -3' miRNA: 3'- aGUaAUGa--GUCGGGGAGGUCCGCGAA- -5' |
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20542 | 5' | -56.6 | NC_004688.1 | + | 91409 | 1.06 | 0.002124 |
Target: 5'- cUCAUUACUCAGCCCCUCCAGGCGCUUg -3' miRNA: 3'- -AGUAAUGAGUCGGGGAGGUCCGCGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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