miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20549 5' -51.3 NC_004688.1 + 55053 0.66 0.983871
Target:  5'- aGGGUUUGCaaccucuggCCCGCAagUGGUcggGUGAGa -3'
miRNA:   3'- -CCUAAACG---------GGGCGUaaAUCG---CGCUCc -5'
20549 5' -51.3 NC_004688.1 + 85103 0.67 0.968715
Target:  5'- cGGAUUcgaUGUCuuGCucuucGGCGuCGAGGa -3'
miRNA:   3'- -CCUAA---ACGGggCGuaaa-UCGC-GCUCC- -5'
20549 5' -51.3 NC_004688.1 + 31121 0.67 0.965439
Target:  5'- cGGAgauguacaugUUGCCCaCGCGcu--GCGCGGuGGg -3'
miRNA:   3'- -CCUa---------AACGGG-GCGUaaauCGCGCU-CC- -5'
20549 5' -51.3 NC_004688.1 + 22135 0.67 0.96193
Target:  5'- -----cGCCCUGCGga---CGCGAGGa -3'
miRNA:   3'- ccuaaaCGGGGCGUaaaucGCGCUCC- -5'
20549 5' -51.3 NC_004688.1 + 42651 0.67 0.96193
Target:  5'- -----gGCCUCGCGUUUaacgAGgGCGAGa -3'
miRNA:   3'- ccuaaaCGGGGCGUAAA----UCgCGCUCc -5'
20549 5' -51.3 NC_004688.1 + 79524 0.69 0.924846
Target:  5'- -----gGCCgCCGCcUUUuGCGCGGGGc -3'
miRNA:   3'- ccuaaaCGG-GGCGuAAAuCGCGCUCC- -5'
20549 5' -51.3 NC_004688.1 + 40303 0.69 0.919042
Target:  5'- uGGAaaaGCCCCGCGcaccUUGGUggugGCGGGGu -3'
miRNA:   3'- -CCUaaaCGGGGCGUa---AAUCG----CGCUCC- -5'
20549 5' -51.3 NC_004688.1 + 49883 0.69 0.90665
Target:  5'- cGGGUUUGCCCgGUuc----CGUGAGGu -3'
miRNA:   3'- -CCUAAACGGGgCGuaaaucGCGCUCC- -5'
20549 5' -51.3 NC_004688.1 + 2864 0.7 0.878797
Target:  5'- uGGAUUgggcacgggGCCCUGCA---GGCGCaaucGAGGu -3'
miRNA:   3'- -CCUAAa--------CGGGGCGUaaaUCGCG----CUCC- -5'
20549 5' -51.3 NC_004688.1 + 17903 0.7 0.871218
Target:  5'- gGGGUgacgUGCCagCCGCAagcucuacgAGCGCGAGa -3'
miRNA:   3'- -CCUAa---ACGG--GGCGUaaa------UCGCGCUCc -5'
20549 5' -51.3 NC_004688.1 + 93489 0.7 0.871218
Target:  5'- ----aUGUCCCGCcgcggccgGGCGUGAGGu -3'
miRNA:   3'- ccuaaACGGGGCGuaaa----UCGCGCUCC- -5'
20549 5' -51.3 NC_004688.1 + 95407 1.14 0.003157
Target:  5'- cGGAUUUGCCCCGCAUUUAGCGCGAGGu -3'
miRNA:   3'- -CCUAAACGGGGCGUAAAUCGCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.