miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2055 3' -49.6 NC_001347.2 + 71479 0.69 0.988337
Target:  5'- aUACACGAcuaccacuGGAGGAGAGGAAa -3'
miRNA:   3'- -GUGUGUUcuucuu--CCUCCUCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 135303 0.7 0.985773
Target:  5'- -uUugGGGAGcAGcGGGGGAGGGGAGCg -3'
miRNA:   3'- guGugUUCUUcUU-CCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 79940 0.7 0.983964
Target:  5'- cCGCGCu--GGGAAcGAGGAGAGGAAg -3'
miRNA:   3'- -GUGUGuucUUCUUcCUCCUCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 164897 0.7 0.97983
Target:  5'- -uCGCuGAGggGGAGGAGGAGGcGGuGGCc -3'
miRNA:   3'- guGUG-UUCuuCUUCCUCCUCU-CC-UUG- -5'
2055 3' -49.6 NC_001347.2 + 58201 0.7 0.979605
Target:  5'- -cCAgAGGAAG-AGGAGGAuggugcuGAGGAACc -3'
miRNA:   3'- guGUgUUCUUCuUCCUCCU-------CUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 47151 0.71 0.977488
Target:  5'- gGCAgCGGGGAGGagAGGAGaGAgaaGAGGAGCg -3'
miRNA:   3'- gUGU-GUUCUUCU--UCCUC-CU---CUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 111321 0.71 0.974952
Target:  5'- cCAC-CGAGGAaGAGGAGGAagaaGAGGAAg -3'
miRNA:   3'- -GUGuGUUCUUcUUCCUCCU----CUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 77088 0.71 0.972214
Target:  5'- gGCAgAAGAGGAGgcGGAGGAGu-GAACg -3'
miRNA:   3'- gUGUgUUCUUCUU--CCUCCUCucCUUG- -5'
2055 3' -49.6 NC_001347.2 + 187742 0.74 0.903205
Target:  5'- uGCGCAGGucuuGGGAGGAGcuGGAGCg -3'
miRNA:   3'- gUGUGUUCuucuUCCUCCUCu-CCUUG- -5'
2055 3' -49.6 NC_001347.2 + 136718 0.75 0.889813
Target:  5'- cCGgAgGAGAGGggGGGGGuGAGGGGg -3'
miRNA:   3'- -GUgUgUUCUUCuuCCUCCuCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 188279 0.75 0.882757
Target:  5'- aGCugAAGGcuuGGGAGGAGAGGcAGCa -3'
miRNA:   3'- gUGugUUCUucuUCCUCCUCUCC-UUG- -5'
2055 3' -49.6 NC_001347.2 + 98176 0.75 0.867949
Target:  5'- aCACACAAu--GggGGAGGGGAuGAACa -3'
miRNA:   3'- -GUGUGUUcuuCuuCCUCCUCUcCUUG- -5'
2055 3' -49.6 NC_001347.2 + 151196 0.76 0.827141
Target:  5'- aACGCGGGAGGGGgauucGGAGGAGAGcAGCg -3'
miRNA:   3'- gUGUGUUCUUCUU-----CCUCCUCUCcUUG- -5'
2055 3' -49.6 NC_001347.2 + 185362 0.79 0.7124
Target:  5'- cCGC-CGugGGGgccgcGGAGGGAGGAGAGGGACg -3'
miRNA:   3'- -GUGuGU--UCU-----UCUUCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 135403 0.79 0.681428
Target:  5'- aCugGCGgccGGAcccucgAGAGGGGGGAGGGGAGCc -3'
miRNA:   3'- -GugUGU---UCU------UCUUCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 135985 0.81 0.597622
Target:  5'- gGguCGAGcGGggGGAGGGGAGGGACc -3'
miRNA:   3'- gUguGUUCuUCuuCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 207739 0.84 0.423536
Target:  5'- aGCAUggagcccgguguccgAGGAAGAAGGAGGAGAGGAcaACg -3'
miRNA:   3'- gUGUG---------------UUCUUCUUCCUCCUCUCCU--UG- -5'
2055 3' -49.6 NC_001347.2 + 39448 1.09 0.016133
Target:  5'- gCACACAAGAAGAAGGAGGAGAGGAACc -3'
miRNA:   3'- -GUGUGUUCUUCUUCCUCCUCUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.