miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2055 3' -49.6 NC_001347.2 + 6281 0.66 0.999461
Target:  5'- -cCGgAGGAAGAGGccGAGGAacccGAGGAAUa -3'
miRNA:   3'- guGUgUUCUUCUUC--CUCCU----CUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 39448 1.09 0.016133
Target:  5'- gCACACAAGAAGAAGGAGGAGAGGAACc -3'
miRNA:   3'- -GUGUGUUCUUCUUCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 40079 0.66 0.999182
Target:  5'- aCACACGAaAAGcaacgcccGGGGGcGAGGGACg -3'
miRNA:   3'- -GUGUGUUcUUCuu------CCUCCuCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 47151 0.71 0.977488
Target:  5'- gGCAgCGGGGAGGagAGGAGaGAgaaGAGGAGCg -3'
miRNA:   3'- gUGU-GUUCUUCU--UCCUC-CU---CUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 47556 0.68 0.995221
Target:  5'- uCACAugucCAGGAGGucGG-GGAGAGGGc- -3'
miRNA:   3'- -GUGU----GUUCUUCuuCCuCCUCUCCUug -5'
2055 3' -49.6 NC_001347.2 + 58111 0.69 0.991377
Target:  5'- --gAUGAGGaagAGGAGGAGGgugcucaGGAGGAGCg -3'
miRNA:   3'- gugUGUUCU---UCUUCCUCC-------UCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 58201 0.7 0.979605
Target:  5'- -cCAgAGGAAG-AGGAGGAuggugcuGAGGAACc -3'
miRNA:   3'- guGUgUUCUUCuUCCUCCU-------CUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 67920 0.67 0.998877
Target:  5'- gACGCGAGGAGGgccGGGAcucaccgucguucucGGAGgAGGGAg -3'
miRNA:   3'- gUGUGUUCUUCU---UCCU---------------CCUC-UCCUUg -5'
2055 3' -49.6 NC_001347.2 + 71479 0.69 0.988337
Target:  5'- aUACACGAcuaccacuGGAGGAGAGGAAa -3'
miRNA:   3'- -GUGUGUUcuucuu--CCUCCUCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 73698 0.66 0.999182
Target:  5'- gCACGCGAGAAGggGccGGGGuccGcGGGCa -3'
miRNA:   3'- -GUGUGUUCUUCuuCcuCCUCu--C-CUUG- -5'
2055 3' -49.6 NC_001347.2 + 77088 0.71 0.972214
Target:  5'- gGCAgAAGAGGAGgcGGAGGAGu-GAACg -3'
miRNA:   3'- gUGUgUUCUUCUU--CCUCCUCucCUUG- -5'
2055 3' -49.6 NC_001347.2 + 78162 0.69 0.988918
Target:  5'- --uGCAAGAAGcuGGuGGAGAugauGGAGCa -3'
miRNA:   3'- gugUGUUCUUCuuCCuCCUCU----CCUUG- -5'
2055 3' -49.6 NC_001347.2 + 79940 0.7 0.983964
Target:  5'- cCGCGCu--GGGAAcGAGGAGAGGAAg -3'
miRNA:   3'- -GUGUGuucUUCUUcCUCCUCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 90628 0.69 0.991494
Target:  5'- gGCAguUGAGggGGAGGAGacggggaaacuGAGAGGAGa -3'
miRNA:   3'- gUGU--GUUCuuCUUCCUC-----------CUCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 98176 0.75 0.867949
Target:  5'- aCACACAAu--GggGGAGGGGAuGAACa -3'
miRNA:   3'- -GUGUGUUcuuCuuCCUCCUCUcCUUG- -5'
2055 3' -49.6 NC_001347.2 + 111321 0.71 0.974952
Target:  5'- cCAC-CGAGGAaGAGGAGGAagaaGAGGAAg -3'
miRNA:   3'- -GUGuGUUCUUcUUCCUCCU----CUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 135224 0.66 0.999001
Target:  5'- gGCugGgcggccgauGGggGGAGGGGaGuGGGGGACc -3'
miRNA:   3'- gUGugU---------UCuuCUUCCUC-CuCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 135303 0.7 0.985773
Target:  5'- -uUugGGGAGcAGcGGGGGAGGGGAGCg -3'
miRNA:   3'- guGugUUCUUcUU-CCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 135403 0.79 0.681428
Target:  5'- aCugGCGgccGGAcccucgAGAGGGGGGAGGGGAGCc -3'
miRNA:   3'- -GugUGU---UCU------UCUUCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 135869 0.66 0.999001
Target:  5'- aGCcCGGGGAGGAGcGGGGuGGGGGu- -3'
miRNA:   3'- gUGuGUUCUUCUUC-CUCCuCUCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.