miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2055 3' -49.6 NC_001347.2 + 222937 0.68 0.997036
Target:  5'- gGCucuCGucucGGggGAccacAGGGGGAGGGGggUa -3'
miRNA:   3'- gUGu--GU----UCuuCU----UCCUCCUCUCCuuG- -5'
2055 3' -49.6 NC_001347.2 + 207739 0.84 0.423536
Target:  5'- aGCAUggagcccgguguccgAGGAAGAAGGAGGAGAGGAcaACg -3'
miRNA:   3'- gUGUG---------------UUCUUCUUCCUCCUCUCCU--UG- -5'
2055 3' -49.6 NC_001347.2 + 202321 0.66 0.999182
Target:  5'- uUugACGGGGcu-GGGuGGAGAGGGAa -3'
miRNA:   3'- -GugUGUUCUucuUCCuCCUCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 195320 0.67 0.998239
Target:  5'- gGCACGGGGGcgucguGAAGGAGGAGAc---- -3'
miRNA:   3'- gUGUGUUCUU------CUUCCUCCUCUccuug -5'
2055 3' -49.6 NC_001347.2 + 188279 0.75 0.882757
Target:  5'- aGCugAAGGcuuGGGAGGAGAGGcAGCa -3'
miRNA:   3'- gUGugUUCUucuUCCUCCUCUCC-UUG- -5'
2055 3' -49.6 NC_001347.2 + 187742 0.74 0.903205
Target:  5'- uGCGCAGGucuuGGGAGGAGcuGGAGCg -3'
miRNA:   3'- gUGUGUUCuucuUCCUCCUCu-CCUUG- -5'
2055 3' -49.6 NC_001347.2 + 185362 0.79 0.7124
Target:  5'- cCGC-CGugGGGgccgcGGAGGGAGGAGAGGGACg -3'
miRNA:   3'- -GUGuGU--UCU-----UCUUCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 177670 0.69 0.988918
Target:  5'- aCACagaGCGGGAGGAcacggAGGAGGAaAGGGAg -3'
miRNA:   3'- -GUG---UGUUCUUCU-----UCCUCCUcUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 177005 0.66 0.999182
Target:  5'- gUAC-CAGGGAGGAGGGGuuaAGAGGucACa -3'
miRNA:   3'- -GUGuGUUCUUCUUCCUCc--UCUCCu-UG- -5'
2055 3' -49.6 NC_001347.2 + 173832 0.66 0.999182
Target:  5'- gGCgGCGGcGGAGGAGGAGGAGGcggcgguuuGGAucGCa -3'
miRNA:   3'- gUG-UGUU-CUUCUUCCUCCUCU---------CCU--UG- -5'
2055 3' -49.6 NC_001347.2 + 164897 0.7 0.97983
Target:  5'- -uCGCuGAGggGGAGGAGGAGGcGGuGGCc -3'
miRNA:   3'- guGUG-UUCuuCUUCCUCCUCU-CC-UUG- -5'
2055 3' -49.6 NC_001347.2 + 156749 0.67 0.998715
Target:  5'- aCGCugAuGAAGAggAGGAGGAGuugcuggcucuggcGGGAGa -3'
miRNA:   3'- -GUGugUuCUUCU--UCCUCCUC--------------UCCUUg -5'
2055 3' -49.6 NC_001347.2 + 152009 0.67 0.998787
Target:  5'- aGCAaCAGGA--GAGGAGGAGAGccGGCa -3'
miRNA:   3'- gUGU-GUUCUucUUCCUCCUCUCc-UUG- -5'
2055 3' -49.6 NC_001347.2 + 151196 0.76 0.827141
Target:  5'- aACGCGGGAGGGGgauucGGAGGAGAGcAGCg -3'
miRNA:   3'- gUGUGUUCUUCUU-----CCUCCUCUCcUUG- -5'
2055 3' -49.6 NC_001347.2 + 144605 0.67 0.998534
Target:  5'- gAgGCAAGAaaguGGuAGGGGGAGGGGu-- -3'
miRNA:   3'- gUgUGUUCU----UCuUCCUCCUCUCCuug -5'
2055 3' -49.6 NC_001347.2 + 144014 0.68 0.995221
Target:  5'- aCAUcCAGGAGGcgGAGGAGGcgcuGAGGGAg -3'
miRNA:   3'- -GUGuGUUCUUC--UUCCUCCu---CUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 136718 0.75 0.889813
Target:  5'- cCGgAgGAGAGGggGGGGGuGAGGGGg -3'
miRNA:   3'- -GUgUgUUCUUCuuCCUCCuCUCCUUg -5'
2055 3' -49.6 NC_001347.2 + 135985 0.81 0.597622
Target:  5'- gGguCGAGcGGggGGAGGGGAGGGACc -3'
miRNA:   3'- gUguGUUCuUCuuCCUCCUCUCCUUG- -5'
2055 3' -49.6 NC_001347.2 + 135869 0.66 0.999001
Target:  5'- aGCcCGGGGAGGAGcGGGGuGGGGGu- -3'
miRNA:   3'- gUGuGUUCUUCUUC-CUCCuCUCCUug -5'
2055 3' -49.6 NC_001347.2 + 135403 0.79 0.681428
Target:  5'- aCugGCGgccGGAcccucgAGAGGGGGGAGGGGAGCc -3'
miRNA:   3'- -GugUGU---UCU------UCUUCCUCCUCUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.