miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2055 5' -69 NC_001347.2 + 124337 0.66 0.44945
Target:  5'- -uGGCUC-CCGGguaCCGCGGCCgGCGu -3'
miRNA:   3'- uuCCGGGaGGCCgg-GGCGCCGG-CGCu -5'
2055 5' -69 NC_001347.2 + 135209 0.66 0.44945
Target:  5'- cGAGGCgCCgaccCCGGCUggGCGGCCGaUGGg -3'
miRNA:   3'- -UUCCG-GGa---GGCCGGggCGCCGGC-GCU- -5'
2055 5' -69 NC_001347.2 + 88620 0.66 0.441252
Target:  5'- -cGGCCUgCgCGGCCugcaCCGCGGCUugaGCGGc -3'
miRNA:   3'- uuCCGGGaG-GCCGG----GGCGCCGG---CGCU- -5'
2055 5' -69 NC_001347.2 + 167214 0.66 0.433139
Target:  5'- cGAGGCCgCgCCGGCC--GC-GCCGCGAg -3'
miRNA:   3'- -UUCCGG-GaGGCCGGggCGcCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 188911 0.66 0.431527
Target:  5'- -cGGCCCccgcUCCGGCCCCGacaccuaccuUCGCGGg -3'
miRNA:   3'- uuCCGGG----AGGCCGGGGCgcc-------GGCGCU- -5'
2055 5' -69 NC_001347.2 + 15567 0.66 0.430722
Target:  5'- cGAGGCCgcuggucaucaggaCgauaCGGgCCCGCGGCUGCa- -3'
miRNA:   3'- -UUCCGG--------------Gag--GCCgGGGCGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 157604 0.66 0.425114
Target:  5'- -cGGCUCUaCCcGCCCgaGCGGCUGCa- -3'
miRNA:   3'- uuCCGGGA-GGcCGGGg-CGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 184489 0.66 0.417178
Target:  5'- -cGGCCUcgggCGGCCCgGCcGCCGCGc -3'
miRNA:   3'- uuCCGGGag--GCCGGGgCGcCGGCGCu -5'
2055 5' -69 NC_001347.2 + 90163 0.66 0.417178
Target:  5'- -cGGCaaa--GGCUuagCCGCGGCCGCGAa -3'
miRNA:   3'- uuCCGggaggCCGG---GGCGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 118529 0.67 0.393922
Target:  5'- cAGGCCCU-CGGCguaCUGCaGGCUGUGGg -3'
miRNA:   3'- uUCCGGGAgGCCGg--GGCG-CCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 110109 0.67 0.371524
Target:  5'- gAGGGaCCCUCguCGGaa--GCGGCCGCGAu -3'
miRNA:   3'- -UUCC-GGGAG--GCCggggCGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 78434 0.67 0.364253
Target:  5'- -cGGCCCggCGGCgCCCgaGCGGgacauCCGCGAc -3'
miRNA:   3'- uuCCGGGagGCCG-GGG--CGCC-----GGCGCU- -5'
2055 5' -69 NC_001347.2 + 136086 0.67 0.364253
Target:  5'- cGGGCCCgcggacggaCCGGCgCCGggccuCGGCCGgGGa -3'
miRNA:   3'- uUCCGGGa--------GGCCGgGGC-----GCCGGCgCU- -5'
2055 5' -69 NC_001347.2 + 177803 0.67 0.364253
Target:  5'- aAAGGCCCUgcggagacaCCGGuUCCUGUGGCaacgGCGGc -3'
miRNA:   3'- -UUCCGGGA---------GGCC-GGGGCGCCGg---CGCU- -5'
2055 5' -69 NC_001347.2 + 197138 0.67 0.357081
Target:  5'- cGGGCCCgCCGucgucgccGCCCCGgGGCCcuCGGu -3'
miRNA:   3'- uUCCGGGaGGC--------CGGGGCgCCGGc-GCU- -5'
2055 5' -69 NC_001347.2 + 208362 0.67 0.350009
Target:  5'- cAGGGCCa-CCGaUCCCGCGGCCaGCa- -3'
miRNA:   3'- -UUCCGGgaGGCcGGGGCGCCGG-CGcu -5'
2055 5' -69 NC_001347.2 + 193841 0.68 0.343037
Target:  5'- uGGGGCUCU-CGGCCUCGauGCUGCGc -3'
miRNA:   3'- -UUCCGGGAgGCCGGGGCgcCGGCGCu -5'
2055 5' -69 NC_001347.2 + 160136 0.68 0.343037
Target:  5'- -cGGCUCUCCGGUggggagCUGCGGuuGCGu -3'
miRNA:   3'- uuCCGGGAGGCCGg-----GGCGCCggCGCu -5'
2055 5' -69 NC_001347.2 + 203316 0.68 0.336166
Target:  5'- cGGGCUCgCCGGCCCuUGCG-CCGCu- -3'
miRNA:   3'- uUCCGGGaGGCCGGG-GCGCcGGCGcu -5'
2055 5' -69 NC_001347.2 + 90787 0.68 0.309692
Target:  5'- -uGGaUCCUCCGucguCCUCGCGGCCGCc- -3'
miRNA:   3'- uuCC-GGGAGGCc---GGGGCGCCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.