Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2055 | 5' | -69 | NC_001347.2 | + | 39483 | 1.05 | 0.000651 |
Target: 5'- gAAGGCCCUCCGGCCCCGCGGCCGCGAc -3' miRNA: 3'- -UUCCGGGAGGCCGGGGCGCCGGCGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 63221 | 0.75 | 0.115417 |
Target: 5'- -cGGCCgCUgacgcuguuuacgCCGGCCuCCGCGGCCGCu- -3' miRNA: 3'- uuCCGG-GA-------------GGCCGG-GGCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 24869 | 0.74 | 0.133169 |
Target: 5'- -cGGCCCUggacUUGGCCCCuGCGGCUGCu- -3' miRNA: 3'- uuCCGGGA----GGCCGGGG-CGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 76608 | 0.74 | 0.136309 |
Target: 5'- aGAGGUCCUCgcaggCGGCggCUGCGGCCGCGGc -3' miRNA: 3'- -UUCCGGGAG-----GCCGg-GGCGCCGGCGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 91047 | 0.73 | 0.156617 |
Target: 5'- cGAGGCCUUCCugccgcucauGGCCuuCUGCGGCCGCc- -3' miRNA: 3'- -UUCCGGGAGG----------CCGG--GGCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 145543 | 0.73 | 0.163974 |
Target: 5'- --aGCCCUCCacccugacGGCCgCCGCGGCCGUc- -3' miRNA: 3'- uucCGGGAGG--------CCGG-GGCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 28991 | 0.72 | 0.167768 |
Target: 5'- --aGCCCUCUGGgCCC-CGGUCGCGGg -3' miRNA: 3'- uucCGGGAGGCCgGGGcGCCGGCGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 192249 | 0.71 | 0.214927 |
Target: 5'- -cGGCCUcgCCGGCCCgaGCGcGCCGgGGa -3' miRNA: 3'- uuCCGGGa-GGCCGGGg-CGC-CGGCgCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 172535 | 0.7 | 0.234718 |
Target: 5'- gGGGGCCCgCUGGCUCggCGCGGCUGUa- -3' miRNA: 3'- -UUCCGGGaGGCCGGG--GCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 18458 | 0.7 | 0.245176 |
Target: 5'- gAGGGCCUgcgcgccugCCGGCCUuuugaccacaUGcCGGCCGCGGa -3' miRNA: 3'- -UUCCGGGa--------GGCCGGG----------GC-GCCGGCGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 55624 | 0.7 | 0.245176 |
Target: 5'- cGGGaCCgaUCCaGCCuCCGCGGCCGgGAa -3' miRNA: 3'- uUCC-GGg-AGGcCGG-GGCGCCGGCgCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 904 | 0.7 | 0.245176 |
Target: 5'- --cGCCC-CCcGCCCCuuggucGCGGCCGCGGg -3' miRNA: 3'- uucCGGGaGGcCGGGG------CGCCGGCGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 89551 | 0.7 | 0.256017 |
Target: 5'- cGGGCaCCU-CGcGCCCCgagaaGCGGCCGCGc -3' miRNA: 3'- uUCCG-GGAgGC-CGGGG-----CGCCGGCGCu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 126881 | 0.7 | 0.256017 |
Target: 5'- uGGGGCUggCCGGCUaCgGCGGCCGCa- -3' miRNA: 3'- -UUCCGGgaGGCCGG-GgCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 106212 | 0.7 | 0.262146 |
Target: 5'- cGGGCCCgCCGGCCacgagccagacgagGCGGCgGCGGu -3' miRNA: 3'- uUCCGGGaGGCCGGgg------------CGCCGgCGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 169119 | 0.69 | 0.297063 |
Target: 5'- -cGGCCU--CGGCCgCGCGcGCCGCGc -3' miRNA: 3'- uuCCGGGagGCCGGgGCGC-CGGCGCu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 62917 | 0.68 | 0.303327 |
Target: 5'- cGGGaUCUCgGGCCCUGCGGCCaUGGa -3' miRNA: 3'- uUCCgGGAGgCCGGGGCGCCGGcGCU- -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 63090 | 0.68 | 0.303327 |
Target: 5'- uGGGCUCggcaagugCCgccguGGCCgCCGCGGCCGCc- -3' miRNA: 3'- uUCCGGGa-------GG-----CCGG-GGCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 90787 | 0.68 | 0.309692 |
Target: 5'- -uGGaUCCUCCGucguCCUCGCGGCCGCc- -3' miRNA: 3'- uuCC-GGGAGGCc---GGGGCGCCGGCGcu -5' |
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2055 | 5' | -69 | NC_001347.2 | + | 203316 | 0.68 | 0.336166 |
Target: 5'- cGGGCUCgCCGGCCCuUGCG-CCGCu- -3' miRNA: 3'- uUCCGGGaGGCCGGG-GCGCcGGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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