miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2055 5' -69 NC_001347.2 + 904 0.7 0.245176
Target:  5'- --cGCCC-CCcGCCCCuuggucGCGGCCGCGGg -3'
miRNA:   3'- uucCGGGaGGcCGGGG------CGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 15567 0.66 0.430722
Target:  5'- cGAGGCCgcuggucaucaggaCgauaCGGgCCCGCGGCUGCa- -3'
miRNA:   3'- -UUCCGG--------------Gag--GCCgGGGCGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 18458 0.7 0.245176
Target:  5'- gAGGGCCUgcgcgccugCCGGCCUuuugaccacaUGcCGGCCGCGGa -3'
miRNA:   3'- -UUCCGGGa--------GGCCGGG----------GC-GCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 24869 0.74 0.133169
Target:  5'- -cGGCCCUggacUUGGCCCCuGCGGCUGCu- -3'
miRNA:   3'- uuCCGGGA----GGCCGGGG-CGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 28991 0.72 0.167768
Target:  5'- --aGCCCUCUGGgCCC-CGGUCGCGGg -3'
miRNA:   3'- uucCGGGAGGCCgGGGcGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 39483 1.05 0.000651
Target:  5'- gAAGGCCCUCCGGCCCCGCGGCCGCGAc -3'
miRNA:   3'- -UUCCGGGAGGCCGGGGCGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 55624 0.7 0.245176
Target:  5'- cGGGaCCgaUCCaGCCuCCGCGGCCGgGAa -3'
miRNA:   3'- uUCC-GGg-AGGcCGG-GGCGCCGGCgCU- -5'
2055 5' -69 NC_001347.2 + 62917 0.68 0.303327
Target:  5'- cGGGaUCUCgGGCCCUGCGGCCaUGGa -3'
miRNA:   3'- uUCCgGGAGgCCGGGGCGCCGGcGCU- -5'
2055 5' -69 NC_001347.2 + 63090 0.68 0.303327
Target:  5'- uGGGCUCggcaagugCCgccguGGCCgCCGCGGCCGCc- -3'
miRNA:   3'- uUCCGGGa-------GG-----CCGG-GGCGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 63221 0.75 0.115417
Target:  5'- -cGGCCgCUgacgcuguuuacgCCGGCCuCCGCGGCCGCu- -3'
miRNA:   3'- uuCCGG-GA-------------GGCCGG-GGCGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 76608 0.74 0.136309
Target:  5'- aGAGGUCCUCgcaggCGGCggCUGCGGCCGCGGc -3'
miRNA:   3'- -UUCCGGGAG-----GCCGg-GGCGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 78434 0.67 0.364253
Target:  5'- -cGGCCCggCGGCgCCCgaGCGGgacauCCGCGAc -3'
miRNA:   3'- uuCCGGGagGCCG-GGG--CGCC-----GGCGCU- -5'
2055 5' -69 NC_001347.2 + 88620 0.66 0.441252
Target:  5'- -cGGCCUgCgCGGCCugcaCCGCGGCUugaGCGGc -3'
miRNA:   3'- uuCCGGGaG-GCCGG----GGCGCCGG---CGCU- -5'
2055 5' -69 NC_001347.2 + 89551 0.7 0.256017
Target:  5'- cGGGCaCCU-CGcGCCCCgagaaGCGGCCGCGc -3'
miRNA:   3'- uUCCG-GGAgGC-CGGGG-----CGCCGGCGCu -5'
2055 5' -69 NC_001347.2 + 90163 0.66 0.417178
Target:  5'- -cGGCaaa--GGCUuagCCGCGGCCGCGAa -3'
miRNA:   3'- uuCCGggaggCCGG---GGCGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 90787 0.68 0.309692
Target:  5'- -uGGaUCCUCCGucguCCUCGCGGCCGCc- -3'
miRNA:   3'- uuCC-GGGAGGCc---GGGGCGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 91047 0.73 0.156617
Target:  5'- cGAGGCCUUCCugccgcucauGGCCuuCUGCGGCCGCc- -3'
miRNA:   3'- -UUCCGGGAGG----------CCGG--GGCGCCGGCGcu -5'
2055 5' -69 NC_001347.2 + 106212 0.7 0.262146
Target:  5'- cGGGCCCgCCGGCCacgagccagacgagGCGGCgGCGGu -3'
miRNA:   3'- uUCCGGGaGGCCGGgg------------CGCCGgCGCU- -5'
2055 5' -69 NC_001347.2 + 110109 0.67 0.371524
Target:  5'- gAGGGaCCCUCguCGGaa--GCGGCCGCGAu -3'
miRNA:   3'- -UUCC-GGGAG--GCCggggCGCCGGCGCU- -5'
2055 5' -69 NC_001347.2 + 118529 0.67 0.393922
Target:  5'- cAGGCCCU-CGGCguaCUGCaGGCUGUGGg -3'
miRNA:   3'- uUCCGGGAgGCCGg--GGCG-CCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.