miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20551 5' -57 NC_004688.1 + 110652 0.66 0.82408
Target:  5'- gAGCgACgGGAcccUAUCGGCGGGUacggucacauaGGGCa -3'
miRNA:   3'- -UCG-UGgCCUa--GUAGCCGCUCA-----------UCCGc -5'
20551 5' -57 NC_004688.1 + 57933 0.66 0.82408
Target:  5'- gGGCACCucGGggCugcuggccugUGGCGGuGUAGGCGa -3'
miRNA:   3'- -UCGUGG--CCuaGua--------GCCGCU-CAUCCGC- -5'
20551 5' -57 NC_004688.1 + 97898 0.66 0.788306
Target:  5'- cGCGCgGGccUC-UCGGCGGcUAGGCGc -3'
miRNA:   3'- uCGUGgCCu-AGuAGCCGCUcAUCCGC- -5'
20551 5' -57 NC_004688.1 + 26053 0.67 0.77898
Target:  5'- cAGCACCGGGggCA-CGGCuccGGGgAGGCc -3'
miRNA:   3'- -UCGUGGCCUa-GUaGCCG---CUCaUCCGc -5'
20551 5' -57 NC_004688.1 + 50044 0.67 0.77804
Target:  5'- uGGCGCCGGAUCGaccagCGcaaccccaaucuaGCGGG-AGGCc -3'
miRNA:   3'- -UCGUGGCCUAGUa----GC-------------CGCUCaUCCGc -5'
20551 5' -57 NC_004688.1 + 63000 0.67 0.763783
Target:  5'- gGGCACCGGcGaugccgauguggaagUCcUCGGCGcGgcGGCGg -3'
miRNA:   3'- -UCGUGGCC-U---------------AGuAGCCGCuCauCCGC- -5'
20551 5' -57 NC_004688.1 + 23923 0.67 0.759934
Target:  5'- gGGCGCUGGcaacguugccgaGUCcgcCGGCGAGgccGGCGa -3'
miRNA:   3'- -UCGUGGCC------------UAGua-GCCGCUCau-CCGC- -5'
20551 5' -57 NC_004688.1 + 67615 0.67 0.759934
Target:  5'- -cCACCGuuacgggcaggaGGUCGUCGGCGgcGGUcGGCGg -3'
miRNA:   3'- ucGUGGC------------CUAGUAGCCGC--UCAuCCGC- -5'
20551 5' -57 NC_004688.1 + 31022 0.67 0.750232
Target:  5'- uGGCgagguuGCCaGGUCGUCGGCGuu--GGCGa -3'
miRNA:   3'- -UCG------UGGcCUAGUAGCCGCucauCCGC- -5'
20551 5' -57 NC_004688.1 + 77411 0.67 0.740424
Target:  5'- uGCAuCCGGG-CGUCGGgguCGAGggguUGGGCGa -3'
miRNA:   3'- uCGU-GGCCUaGUAGCC---GCUC----AUCCGC- -5'
20551 5' -57 NC_004688.1 + 45787 0.67 0.736473
Target:  5'- uGCACCGGcugcugggcgugUAUUGGCGAggcuGUGGGCu -3'
miRNA:   3'- uCGUGGCCua----------GUAGCCGCU----CAUCCGc -5'
20551 5' -57 NC_004688.1 + 5738 0.67 0.730518
Target:  5'- gGGC-CCGGGUgAcgCGGcCGAG-GGGCGg -3'
miRNA:   3'- -UCGuGGCCUAgUa-GCC-GCUCaUCCGC- -5'
20551 5' -57 NC_004688.1 + 19456 0.68 0.720526
Target:  5'- gGGCGCUcuucacgcuuguGGGccUCGUCGGCGuAGUAGGa- -3'
miRNA:   3'- -UCGUGG------------CCU--AGUAGCCGC-UCAUCCgc -5'
20551 5' -57 NC_004688.1 + 62920 0.68 0.717513
Target:  5'- uGCugCGGAacaucuuucgcagcUCGcccuugugaGGCGGGUGGGCGu -3'
miRNA:   3'- uCGugGCCU--------------AGUag-------CCGCUCAUCCGC- -5'
20551 5' -57 NC_004688.1 + 33620 0.68 0.710456
Target:  5'- cAGCGCCcGGGUCGagGGUGAugauGGCGu -3'
miRNA:   3'- -UCGUGG-CCUAGUagCCGCUcau-CCGC- -5'
20551 5' -57 NC_004688.1 + 50820 0.69 0.659271
Target:  5'- uGUACCGGG--AUUGGCGGG-AGGUGc -3'
miRNA:   3'- uCGUGGCCUagUAGCCGCUCaUCCGC- -5'
20551 5' -57 NC_004688.1 + 51182 0.7 0.607518
Target:  5'- uGCAUcugCGGGUgGUCGGCG-GcAGGCGa -3'
miRNA:   3'- uCGUG---GCCUAgUAGCCGCuCaUCCGC- -5'
20551 5' -57 NC_004688.1 + 79846 0.7 0.597192
Target:  5'- gGGCGCC----CGUCGGcCGAGUGGGCc -3'
miRNA:   3'- -UCGUGGccuaGUAGCC-GCUCAUCCGc -5'
20551 5' -57 NC_004688.1 + 100456 0.7 0.566402
Target:  5'- uGCACUGGAUCgaGUCGGU-AG-AGGCGc -3'
miRNA:   3'- uCGUGGCCUAG--UAGCCGcUCaUCCGC- -5'
20551 5' -57 NC_004688.1 + 74806 0.71 0.526034
Target:  5'- uGUACCcagccGAUCuGUCGGCGGGUGGGgGu -3'
miRNA:   3'- uCGUGGc----CUAG-UAGCCGCUCAUCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.