miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20552 5' -63.5 NC_004688.1 + 24029 0.66 0.509727
Target:  5'- cCGCCCCACUucaugaggaacuUCAGccaGGCcGGGauacugacGGCCGc -3'
miRNA:   3'- -GCGGGGUGA------------AGUCag-CCG-CCC--------CCGGU- -5'
20552 5' -63.5 NC_004688.1 + 70028 0.66 0.506896
Target:  5'- uCGCCUCAUccaGGUCGGUGaacaugauguaggcGGGGCUAu -3'
miRNA:   3'- -GCGGGGUGaagUCAGCCGC--------------CCCCGGU- -5'
20552 5' -63.5 NC_004688.1 + 25745 0.66 0.500316
Target:  5'- uCGCCCCGCcggGGcCGccuUGGGGGCCGc -3'
miRNA:   3'- -GCGGGGUGaagUCaGCc--GCCCCCGGU- -5'
20552 5' -63.5 NC_004688.1 + 37652 0.66 0.48173
Target:  5'- uCGCCgaagaccgauCCAacaCGGUCGcCGGGGGCCGc -3'
miRNA:   3'- -GCGG----------GGUgaaGUCAGCcGCCCCCGGU- -5'
20552 5' -63.5 NC_004688.1 + 39658 0.66 0.48173
Target:  5'- uCGCCCCGC--CGGgCGGUGucucaaguugauGGGGCCu -3'
miRNA:   3'- -GCGGGGUGaaGUCaGCCGC------------CCCCGGu -5'
20552 5' -63.5 NC_004688.1 + 78740 0.66 0.48173
Target:  5'- uGCCCCAgaUCGGcuUCGGCGGcucGCCc -3'
miRNA:   3'- gCGGGGUgaAGUC--AGCCGCCcc-CGGu -5'
20552 5' -63.5 NC_004688.1 + 17686 0.67 0.41105
Target:  5'- gCGCUCCACg--GGUucCGGCGcGGGCCGc -3'
miRNA:   3'- -GCGGGGUGaagUCA--GCCGCcCCCGGU- -5'
20552 5' -63.5 NC_004688.1 + 63934 0.68 0.402674
Target:  5'- gCGCCCCcacACUggcCGGggaccgccUCGGCGGGGcguGCCGu -3'
miRNA:   3'- -GCGGGG---UGAa--GUC--------AGCCGCCCC---CGGU- -5'
20552 5' -63.5 NC_004688.1 + 48780 0.68 0.394406
Target:  5'- uGCUCUACgagCAGagGGUgcgGGGGGCCu -3'
miRNA:   3'- gCGGGGUGaa-GUCagCCG---CCCCCGGu -5'
20552 5' -63.5 NC_004688.1 + 75899 0.68 0.362457
Target:  5'- cCGCCCUcuucGCguacCAGagGGCGGcGGGCCc -3'
miRNA:   3'- -GCGGGG----UGaa--GUCagCCGCC-CCCGGu -5'
20552 5' -63.5 NC_004688.1 + 88393 0.69 0.317999
Target:  5'- uCGCCCUugUUgAGUcCGaGUGGGGGUa- -3'
miRNA:   3'- -GCGGGGugAAgUCA-GC-CGCCCCCGgu -5'
20552 5' -63.5 NC_004688.1 + 96539 1.08 0.000508
Target:  5'- cCGCCCCACUUCAGUCGGCGGGGGCCAg -3'
miRNA:   3'- -GCGGGGUGAAGUCAGCCGCCCCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.