miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20553 3' -65.5 NC_004688.1 + 39067 0.66 0.41943
Target:  5'- ---cCGgCCGcCUCCUCCGCCGCCcGCa -3'
miRNA:   3'- ucgcGCgGGCuGAGGGGGCGGUGG-UG- -5'
20553 3' -65.5 NC_004688.1 + 97926 0.66 0.41943
Target:  5'- cGC-CGCagucgaCGcACUCCCgCCGCC-CCGCg -3'
miRNA:   3'- uCGcGCGg-----GC-UGAGGG-GGCGGuGGUG- -5'
20553 3' -65.5 NC_004688.1 + 38978 0.66 0.411032
Target:  5'- gGGCGCGCCggggauaaCGACggCCCCgGCaACCcCg -3'
miRNA:   3'- -UCGCGCGG--------GCUGa-GGGGgCGgUGGuG- -5'
20553 3' -65.5 NC_004688.1 + 58119 0.66 0.411032
Target:  5'- uGCGgGCgCGg--CCCCCGCCACg-- -3'
miRNA:   3'- uCGCgCGgGCugaGGGGGCGGUGgug -5'
20553 3' -65.5 NC_004688.1 + 65604 0.66 0.402739
Target:  5'- cGUGgaaGCUCGGCgggccguaCCCCGCCuGCCGCa -3'
miRNA:   3'- uCGCg--CGGGCUGag------GGGGCGG-UGGUG- -5'
20553 3' -65.5 NC_004688.1 + 32379 0.66 0.394553
Target:  5'- cAGCGgGCacCCGAuaCUCCCCCGacagcuccuuaCCggGCCACg -3'
miRNA:   3'- -UCGCgCG--GGCU--GAGGGGGC-----------GG--UGGUG- -5'
20553 3' -65.5 NC_004688.1 + 39173 0.66 0.386476
Target:  5'- cGGCgGCGCUgGACccguuggCCCCGgCACCGCc -3'
miRNA:   3'- -UCG-CGCGGgCUGag-----GGGGCgGUGGUG- -5'
20553 3' -65.5 NC_004688.1 + 59326 0.66 0.378508
Target:  5'- cGGCGagggcuccacccUGCCCGACgcgauggCCgCCGCCgGCUACg -3'
miRNA:   3'- -UCGC------------GCGGGCUGa------GGgGGCGG-UGGUG- -5'
20553 3' -65.5 NC_004688.1 + 46496 0.67 0.370651
Target:  5'- aAGCcgauCGCCgCgGGCUCCCCgGUgACCACc -3'
miRNA:   3'- -UCGc---GCGG-G-CUGAGGGGgCGgUGGUG- -5'
20553 3' -65.5 NC_004688.1 + 77300 0.67 0.362907
Target:  5'- uGCGCGCCuuggcuaucuCGACcuguccgucgaUCUCCUGCUugCGCg -3'
miRNA:   3'- uCGCGCGG----------GCUG-----------AGGGGGCGGugGUG- -5'
20553 3' -65.5 NC_004688.1 + 33112 0.67 0.355275
Target:  5'- gGGgGCGCCCGuGCcgCCCaaaaGCC-CCACg -3'
miRNA:   3'- -UCgCGCGGGC-UGa-GGGgg--CGGuGGUG- -5'
20553 3' -65.5 NC_004688.1 + 79258 0.67 0.355275
Target:  5'- aGGUGgaGCCguaGACaUCCCCCauGCCACCAg -3'
miRNA:   3'- -UCGCg-CGGg--CUG-AGGGGG--CGGUGGUg -5'
20553 3' -65.5 NC_004688.1 + 24564 0.67 0.347757
Target:  5'- cGGCGCG-CCGAaccUUCUCCUGCgCAuCCGCg -3'
miRNA:   3'- -UCGCGCgGGCU---GAGGGGGCG-GU-GGUG- -5'
20553 3' -65.5 NC_004688.1 + 22880 0.67 0.340354
Target:  5'- cGC-CGCCgCGGCgccuaCCCCUaCCGCCGCg -3'
miRNA:   3'- uCGcGCGG-GCUGa----GGGGGcGGUGGUG- -5'
20553 3' -65.5 NC_004688.1 + 37621 0.67 0.340354
Target:  5'- gGGC-CGCCCcucggcgguGAcCUCCcaCCCGCCaACCACg -3'
miRNA:   3'- -UCGcGCGGG---------CU-GAGG--GGGCGG-UGGUG- -5'
20553 3' -65.5 NC_004688.1 + 37738 0.67 0.340354
Target:  5'- gGGuUGCGCCCGuaaAC-CCCUCGgCACCAg -3'
miRNA:   3'- -UC-GCGCGGGC---UGaGGGGGCgGUGGUg -5'
20553 3' -65.5 NC_004688.1 + 71149 0.67 0.338155
Target:  5'- gGGCGCGUCCaGccauucggcuagacGCUCaUCgCGCCGCCGCu -3'
miRNA:   3'- -UCGCGCGGG-C--------------UGAG-GGgGCGGUGGUG- -5'
20553 3' -65.5 NC_004688.1 + 87261 0.67 0.332343
Target:  5'- uGC-CGCCgGGCUccaggccCCCCCGCCcacGCCAg -3'
miRNA:   3'- uCGcGCGGgCUGA-------GGGGGCGG---UGGUg -5'
20553 3' -65.5 NC_004688.1 + 86364 0.67 0.325891
Target:  5'- -uCGCGCCCGAUUCugCUCgGCCAugccCCGCa -3'
miRNA:   3'- ucGCGCGGGCUGAG--GGGgCGGU----GGUG- -5'
20553 3' -65.5 NC_004688.1 + 49211 0.67 0.325891
Target:  5'- cGGgGCGUCCGAaaggaUUgCCCGCaCACUGCg -3'
miRNA:   3'- -UCgCGCGGGCUg----AGgGGGCG-GUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.