Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20553 | 5' | -56.1 | NC_004688.1 | + | 17677 | 0.66 | 0.840502 |
Target: 5'- ---gGGUuccggCGCGGGccGCuUGGCGGGCCg -3' miRNA: 3'- uacgCCAua---GCGUCC--UG-ACUGUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 79470 | 0.67 | 0.748051 |
Target: 5'- -cGCGGUcUCG----GCUGAUAGGCCa -3' miRNA: 3'- uaCGCCAuAGCguccUGACUGUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 41488 | 0.67 | 0.754987 |
Target: 5'- -gGUGGUggCGCcuucGGACUGGCGaccuggguuguaccGGCCg -3' miRNA: 3'- uaCGCCAuaGCGu---CCUGACUGU--------------CCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 61825 | 0.67 | 0.757943 |
Target: 5'- -gGCGGUAguugcCGCGGGGCUcGuCGGaGCUg -3' miRNA: 3'- uaCGCCAUa----GCGUCCUGA-CuGUC-CGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 34256 | 0.67 | 0.777364 |
Target: 5'- -aGUGGUGaacUCGUAGGuauCcGACGGGUCc -3' miRNA: 3'- uaCGCCAU---AGCGUCCu--GaCUGUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 77210 | 0.67 | 0.796234 |
Target: 5'- -cGCGGUAUCGgAcGA-UGGCGGcGCCg -3' miRNA: 3'- uaCGCCAUAGCgUcCUgACUGUC-CGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 846 | 0.66 | 0.805438 |
Target: 5'- -gGCGGUGUggcaGCGGGACggGAaugccuuuuuuCAGGCa -3' miRNA: 3'- uaCGCCAUAg---CGUCCUGa-CU-----------GUCCGg -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 73721 | 0.66 | 0.812682 |
Target: 5'- -gGCGGUugauccaGUCGUAGaGAgUGGauucauuCAGGCCg -3' miRNA: 3'- uaCGCCA-------UAGCGUC-CUgACU-------GUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 73319 | 0.66 | 0.823339 |
Target: 5'- -cGCGGgagUGCAgGGACUG-CAGccGCCg -3' miRNA: 3'- uaCGCCauaGCGU-CCUGACuGUC--CGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 102367 | 0.67 | 0.748051 |
Target: 5'- -gGCGGa---GCAGGugUGGCcGGUCu -3' miRNA: 3'- uaCGCCauagCGUCCugACUGuCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 55391 | 0.68 | 0.727952 |
Target: 5'- -aGCGGagcAUCGCcgccGGGCUcGGCuGGCCg -3' miRNA: 3'- uaCGCCa--UAGCGu---CCUGA-CUGuCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 30399 | 0.68 | 0.707503 |
Target: 5'- uUGCGGauaaugGUCGcCAGGGCgcccggGAaCAGGUCg -3' miRNA: 3'- uACGCCa-----UAGC-GUCCUGa-----CU-GUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 79959 | 0.71 | 0.550655 |
Target: 5'- uUGCGGUGgaggGCcauGGGCUugucgGACGGGCCa -3' miRNA: 3'- uACGCCAUag--CGu--CCUGA-----CUGUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 40750 | 0.71 | 0.56098 |
Target: 5'- -gGaCGGUgccAUCGguGGAggGGCGGGCCu -3' miRNA: 3'- uaC-GCCA---UAGCguCCUgaCUGUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 100636 | 0.7 | 0.60273 |
Target: 5'- cGUG-GGUAacUgGCGGGGCaUGGCAGGCg -3' miRNA: 3'- -UACgCCAU--AgCGUCCUG-ACUGUCCGg -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 52374 | 0.7 | 0.61956 |
Target: 5'- -aGCGGUggUGCgGGGACUGGacaacguugaacaAGGCCa -3' miRNA: 3'- uaCGCCAuaGCG-UCCUGACUg------------UCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 16682 | 0.69 | 0.63431 |
Target: 5'- cUGCGGUAggGuUGGGGCaucgcGGCGGGCCa -3' miRNA: 3'- uACGCCAUagC-GUCCUGa----CUGUCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 33564 | 0.69 | 0.63431 |
Target: 5'- cAUGUGGUggCGUugaacuucccGGGCUGACcGGCCu -3' miRNA: 3'- -UACGCCAuaGCGu---------CCUGACUGuCCGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 75640 | 0.69 | 0.665872 |
Target: 5'- -cGgGGUGUCGUcccaGGGGCUcucgucGGCAGcGCCg -3' miRNA: 3'- uaCgCCAUAGCG----UCCUGA------CUGUC-CGG- -5' |
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20553 | 5' | -56.1 | NC_004688.1 | + | 42322 | 0.68 | 0.697172 |
Target: 5'- -cGCGGUcgGUgaacUGCAGGACgucgGGCGuccGGCCg -3' miRNA: 3'- uaCGCCA--UA----GCGUCCUGa---CUGU---CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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