miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20554 5' -56.2 NC_004688.1 + 77956 0.66 0.871005
Target:  5'- cGU-AUUCGGGUUCGaugGGUGGCCgGgCg -3'
miRNA:   3'- cCGuUAAGCCCAGGU---UCGCCGGgUgG- -5'
20554 5' -56.2 NC_004688.1 + 3566 0.66 0.871005
Target:  5'- -cCAGUUCaucacuGGGUCCAGccacauCGGCCgACCa -3'
miRNA:   3'- ccGUUAAG------CCCAGGUUc-----GCCGGgUGG- -5'
20554 5' -56.2 NC_004688.1 + 53632 0.66 0.871005
Target:  5'- cGGCAuugacgUCGccGG-CCugcuuGuCGGCCCACCg -3'
miRNA:   3'- -CCGUua----AGC--CCaGGuu---C-GCCGGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 76385 0.66 0.871005
Target:  5'- cGCGcugaGGGUCCAgAGCgggaacgggaGGCCCAgCCa -3'
miRNA:   3'- cCGUuaagCCCAGGU-UCG----------CCGGGU-GG- -5'
20554 5' -56.2 NC_004688.1 + 18279 0.66 0.863452
Target:  5'- uGGCGAUgccccagcUGcGGUCCAcGaGGCCCgACCa -3'
miRNA:   3'- -CCGUUAa-------GC-CCAGGUuCgCCGGG-UGG- -5'
20554 5' -56.2 NC_004688.1 + 21649 0.66 0.863452
Target:  5'- aGGgGGaUCuGGUUgGAGC-GCCCGCCg -3'
miRNA:   3'- -CCgUUaAGcCCAGgUUCGcCGGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 79040 0.66 0.858817
Target:  5'- aGGC---UCGGGUCCgaugcaauguuguugAugGGCGGCCC-Cg -3'
miRNA:   3'- -CCGuuaAGCCCAGG---------------U--UCGCCGGGuGg -5'
20554 5' -56.2 NC_004688.1 + 5897 0.66 0.855685
Target:  5'- uGGCGAUcaGGGauUCCAAGCGcUCCauGCCg -3'
miRNA:   3'- -CCGUUAagCCC--AGGUUCGCcGGG--UGG- -5'
20554 5' -56.2 NC_004688.1 + 8762 0.66 0.855685
Target:  5'- gGGCcag-CGGGgugcCCGcGUGGUUCACCa -3'
miRNA:   3'- -CCGuuaaGCCCa---GGUuCGCCGGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 95531 0.66 0.855685
Target:  5'- gGGC----UGGGUucCUAGGCGGCCagggGCCg -3'
miRNA:   3'- -CCGuuaaGCCCA--GGUUCGCCGGg---UGG- -5'
20554 5' -56.2 NC_004688.1 + 16955 0.66 0.855685
Target:  5'- cGGCcuGUUCGGGgCCGcuGGCGGgCUucaacacggcGCCg -3'
miRNA:   3'- -CCGu-UAAGCCCaGGU--UCGCCgGG----------UGG- -5'
20554 5' -56.2 NC_004688.1 + 24585 0.66 0.84771
Target:  5'- gGGCGucgCGaaGGUCgAGcGCGGCgCGCCg -3'
miRNA:   3'- -CCGUuaaGC--CCAGgUU-CGCCGgGUGG- -5'
20554 5' -56.2 NC_004688.1 + 12658 0.66 0.84771
Target:  5'- gGGCGAccucggacUUCGGcaCCAgcaugggcAGCGuGUCCACCg -3'
miRNA:   3'- -CCGUU--------AAGCCcaGGU--------UCGC-CGGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 47773 0.66 0.839535
Target:  5'- aGGCgGAUUaCGGGUCCAuuaccuCCCGCCu -3'
miRNA:   3'- -CCG-UUAA-GCCCAGGUucgcc-GGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 17690 0.66 0.839535
Target:  5'- cGGCGcgcuccaCGGGuUCCGGcGCGGgCCGCUu -3'
miRNA:   3'- -CCGUuaa----GCCC-AGGUU-CGCCgGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 729 0.66 0.839535
Target:  5'- uGCGGgcUGGGUCCAgccacaucgGGCG-CCCGCa -3'
miRNA:   3'- cCGUUaaGCCCAGGU---------UCGCcGGGUGg -5'
20554 5' -56.2 NC_004688.1 + 11407 0.66 0.831166
Target:  5'- aGGCGAaggUCGGuG-CCGucagcGCGGUgCCACCg -3'
miRNA:   3'- -CCGUUa--AGCC-CaGGUu----CGCCG-GGUGG- -5'
20554 5' -56.2 NC_004688.1 + 9526 0.66 0.831166
Target:  5'- cGGCGAcaaugUCGGcaagagCCuuGGCGGCCUGCUc -3'
miRNA:   3'- -CCGUUa----AGCCca----GGu-UCGCCGGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 60463 0.66 0.827766
Target:  5'- uGGgGAUUCGGGgucggcgacguaguUCCAGGCuccuGGgaaccugucguauCCCGCCa -3'
miRNA:   3'- -CCgUUAAGCCC--------------AGGUUCG----CC-------------GGGUGG- -5'
20554 5' -56.2 NC_004688.1 + 25932 0.67 0.822611
Target:  5'- uGGCc-----GGUCgCGAGCGGgCCACCc -3'
miRNA:   3'- -CCGuuaagcCCAG-GUUCGCCgGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.