miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20556 5' -66.8 NC_004688.1 + 82357 0.66 0.378805
Target:  5'- uUUCCGCCucgGCCuuGgCGCGG-GCCUUc- -3'
miRNA:   3'- -AGGGCGG---CGGggC-GCGCCaCGGAGag -5'
20556 5' -66.8 NC_004688.1 + 26590 0.66 0.363348
Target:  5'- uUCCgGCCGUUCCGCcaaggGCGGgcuugGCCUg-- -3'
miRNA:   3'- -AGGgCGGCGGGGCG-----CGCCa----CGGAgag -5'
20556 5' -66.8 NC_004688.1 + 57387 0.66 0.363348
Target:  5'- aUCCgGUCGgCCCGCuCGGUGa-UCUCc -3'
miRNA:   3'- -AGGgCGGCgGGGCGcGCCACggAGAG- -5'
20556 5' -66.8 NC_004688.1 + 38685 0.66 0.34612
Target:  5'- cUCCGCCGCCgCCGCcGCGGcgGUagguaucaucgaaaCUCUg -3'
miRNA:   3'- aGGGCGGCGG-GGCG-CGCCa-CG--------------GAGAg -5'
20556 5' -66.8 NC_004688.1 + 37626 0.66 0.340994
Target:  5'- gCCggggGCCGCCCCuCgGCGGUGaCCUCcCa -3'
miRNA:   3'- aGGg---CGGCGGGGcG-CGCCAC-GGAGaG- -5'
20556 5' -66.8 NC_004688.1 + 11395 0.66 0.333767
Target:  5'- --gUGCCGUCa-GCGCGGUGCCaccgaUCUCc -3'
miRNA:   3'- aggGCGGCGGggCGCGCCACGG-----AGAG- -5'
20556 5' -66.8 NC_004688.1 + 26193 0.67 0.30599
Target:  5'- aCCUGCCGCaCCGgGCaugccGGUGCCgggCUg -3'
miRNA:   3'- aGGGCGGCGgGGCgCG-----CCACGGa--GAg -5'
20556 5' -66.8 NC_004688.1 + 37239 0.67 0.30599
Target:  5'- aCCCGUggcuucauuCGCCCC-UGUGGUGCCagcagCUCc -3'
miRNA:   3'- aGGGCG---------GCGGGGcGCGCCACGGa----GAG- -5'
20556 5' -66.8 NC_004688.1 + 92322 0.67 0.299328
Target:  5'- aUCCagGCUGCUCCGCgGCGa-GCUUCUCg -3'
miRNA:   3'- -AGGg-CGGCGGGGCG-CGCcaCGGAGAG- -5'
20556 5' -66.8 NC_004688.1 + 34423 0.67 0.299328
Target:  5'- aCCgUGCCGCCCaCG-GUGGUGCCa--- -3'
miRNA:   3'- aGG-GCGGCGGG-GCgCGCCACGGagag -5'
20556 5' -66.8 NC_004688.1 + 92458 0.68 0.250057
Target:  5'- aUCCCGUCGCCaauaaCGUgGCGGUGagaCUCg- -3'
miRNA:   3'- -AGGGCGGCGGg----GCG-CGCCACg--GAGag -5'
20556 5' -66.8 NC_004688.1 + 10024 0.7 0.202836
Target:  5'- -aCCGCCGCCgCGCGCaGUGCgCgcagUUCu -3'
miRNA:   3'- agGGCGGCGGgGCGCGcCACG-Ga---GAG- -5'
20556 5' -66.8 NC_004688.1 + 85744 0.7 0.202836
Target:  5'- uUCCUgggaaGCUucuuCCCCGCGCGGUGCUugaagaguuUCUCg -3'
miRNA:   3'- -AGGG-----CGGc---GGGGCGCGCCACGG---------AGAG- -5'
20556 5' -66.8 NC_004688.1 + 39669 0.72 0.14839
Target:  5'- uUCUCGggccuUCGCCCCGCcggGCGGUGUCUCa- -3'
miRNA:   3'- -AGGGC-----GGCGGGGCG---CGCCACGGAGag -5'
20556 5' -66.8 NC_004688.1 + 79523 0.73 0.118862
Target:  5'- -gCCGCCGCCUuuUGCGCGGggcgcgGCUUCUUc -3'
miRNA:   3'- agGGCGGCGGG--GCGCGCCa-----CGGAGAG- -5'
20556 5' -66.8 NC_004688.1 + 97910 1.01 0.000823
Target:  5'- cUCCCGCCGCCCCGCGCGG-GCCUCUCg -3'
miRNA:   3'- -AGGGCGGCGGGGCGCGCCaCGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.