miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20557 3' -52.8 NC_004688.1 + 105201 0.66 0.941732
Target:  5'- cAUCGUGGUauccgagcgcggaCAugAGGAAAcGCuACGCa -3'
miRNA:   3'- -UAGCACCA-------------GUugUCCUUU-CGcUGCGc -5'
20557 3' -52.8 NC_004688.1 + 98791 0.67 0.932097
Target:  5'- -gCG-GGcCAGCGGGcuGGCuGACGCGc -3'
miRNA:   3'- uaGCaCCaGUUGUCCuuUCG-CUGCGC- -5'
20557 3' -52.8 NC_004688.1 + 90121 0.67 0.913121
Target:  5'- gGUCGaGGUCuucgcccucccaccAGCGGGuGAGGUGGCGCa -3'
miRNA:   3'- -UAGCaCCAG--------------UUGUCC-UUUCGCUGCGc -5'
20557 3' -52.8 NC_004688.1 + 11188 0.67 0.90873
Target:  5'- -gCGUGGUCGGCAGGGucGgGuCGg- -3'
miRNA:   3'- uaGCACCAGUUGUCCUuuCgCuGCgc -5'
20557 3' -52.8 NC_004688.1 + 35489 0.68 0.866032
Target:  5'- -aUGUGGcCGACGGGGcuGAGCccGCGCGg -3'
miRNA:   3'- uaGCACCaGUUGUCCU--UUCGc-UGCGC- -5'
20557 3' -52.8 NC_004688.1 + 106075 0.68 0.866032
Target:  5'- gGUCGaGGUCcGCAGGGAAaucGCcGGCGCu -3'
miRNA:   3'- -UAGCaCCAGuUGUCCUUU---CG-CUGCGc -5'
20557 3' -52.8 NC_004688.1 + 16881 0.69 0.832894
Target:  5'- -aCGUGGUCGGaaaucuuGGAGAGCGccgacACGCa -3'
miRNA:   3'- uaGCACCAGUUgu-----CCUUUCGC-----UGCGc -5'
20557 3' -52.8 NC_004688.1 + 51172 0.7 0.796564
Target:  5'- --gGUGGUCGGC-GGcAGGCGACgGCGu -3'
miRNA:   3'- uagCACCAGUUGuCCuUUCGCUG-CGC- -5'
20557 3' -52.8 NC_004688.1 + 49652 0.7 0.78705
Target:  5'- uUCGgauugCGACGGGGAGcuGCGACGCGg -3'
miRNA:   3'- uAGCacca-GUUGUCCUUU--CGCUGCGC- -5'
20557 3' -52.8 NC_004688.1 + 15219 0.72 0.663964
Target:  5'- -aCGUGGUCAACGGcGccGCGcCGCGg -3'
miRNA:   3'- uaGCACCAGUUGUCcUuuCGCuGCGC- -5'
20557 3' -52.8 NC_004688.1 + 55834 0.73 0.65328
Target:  5'- aGUCGUGGUCGugAucgaGGugGGCGcCGCGa -3'
miRNA:   3'- -UAGCACCAGUugU----CCuuUCGCuGCGC- -5'
20557 3' -52.8 NC_004688.1 + 98151 1.07 0.005753
Target:  5'- gAUCGUGGUCAACAGGAAAGCGACGCGc -3'
miRNA:   3'- -UAGCACCAGUUGUCCUUUCGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.