miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2056 3' -55 NC_001348.1 + 105721 0.65 0.913688
Target:  5'- ---aGCGcgGCACCCaggccccaUCGGUuuGCUGCg -3'
miRNA:   3'- gauaCGCuaCGUGGGa-------AGUCG--CGGCG- -5'
2056 3' -55 NC_001348.1 + 51362 0.65 0.913688
Target:  5'- ---gGCGGgUGCAUaucUCAGCGCCGg -3'
miRNA:   3'- gauaCGCU-ACGUGggaAGUCGCGGCg -5'
2056 3' -55 NC_001348.1 + 124071 0.65 0.913688
Target:  5'- ---aGCGcgGCACCCaggccccaUCGGUuuGCUGCg -3'
miRNA:   3'- gauaCGCuaCGUGGGa-------AGUCG--CGGCG- -5'
2056 3' -55 NC_001348.1 + 84164 0.66 0.907534
Target:  5'- --cUGCGAUGCAUCC--CGGgGUaCGCg -3'
miRNA:   3'- gauACGCUACGUGGGaaGUCgCG-GCG- -5'
2056 3' -55 NC_001348.1 + 40052 0.66 0.901133
Target:  5'- -cGUGCGuugGUuuuACCCcaUUCGGCGUgGCg -3'
miRNA:   3'- gaUACGCua-CG---UGGG--AAGUCGCGgCG- -5'
2056 3' -55 NC_001348.1 + 80453 0.67 0.873122
Target:  5'- ---cGCGcUGCACCCguagCGGUGUacaGCg -3'
miRNA:   3'- gauaCGCuACGUGGGaa--GUCGCGg--CG- -5'
2056 3' -55 NC_001348.1 + 105371 0.67 0.857737
Target:  5'- --cUGCGGUGCGCCgCUgucGCcCCGCc -3'
miRNA:   3'- gauACGCUACGUGG-GAaguCGcGGCG- -5'
2056 3' -55 NC_001348.1 + 124421 0.67 0.857737
Target:  5'- --cUGCGGUGCGCCgCUgucGCcCCGCc -3'
miRNA:   3'- gauACGCUACGUGG-GAaguCGcGGCG- -5'
2056 3' -55 NC_001348.1 + 111697 0.73 0.532779
Target:  5'- ---gGCGAaGUACCgUUCGGCGUCGUu -3'
miRNA:   3'- gauaCGCUaCGUGGgAAGUCGCGGCG- -5'
2056 3' -55 NC_001348.1 + 118095 0.73 0.532779
Target:  5'- ---gGCGAaGUACCgUUCGGCGUCGUu -3'
miRNA:   3'- gauaCGCUaCGUGGgAAGUCGCGGCG- -5'
2056 3' -55 NC_001348.1 + 2228 1.13 0.001518
Target:  5'- cCUAUGCGAUGCACCCUUCAGCGCCGCa -3'
miRNA:   3'- -GAUACGCUACGUGGGAAGUCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.