miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20568 3' -56.6 NC_004688.1 + 36172 0.66 0.843601
Target:  5'- aACACCaggccgaacGACGCCU-UGCUGUGgcuGGCCg -3'
miRNA:   3'- -UGUGG---------CUGCGGAuAUGGCGUac-CCGG- -5'
20568 3' -56.6 NC_004688.1 + 48299 0.66 0.835309
Target:  5'- gACACCGuguACGCCUcgAUugCGCcggacaacgGGGaCCu -3'
miRNA:   3'- -UGUGGC---UGCGGA--UAugGCGua-------CCC-GG- -5'
20568 3' -56.6 NC_004688.1 + 1723 0.66 0.818162
Target:  5'- uUACCGuucUGCCUggGUGCCGCGaaGGCUg -3'
miRNA:   3'- uGUGGCu--GCGGA--UAUGGCGUacCCGG- -5'
20568 3' -56.6 NC_004688.1 + 17057 0.66 0.818162
Target:  5'- uCGCCuuGGCGaCCUcgccGCCGUuUGGGCCc -3'
miRNA:   3'- uGUGG--CUGC-GGAua--UGGCGuACCCGG- -5'
20568 3' -56.6 NC_004688.1 + 39877 0.66 0.818162
Target:  5'- --gUCGGCGCCUGcuCCGCcgGGuCCg -3'
miRNA:   3'- uguGGCUGCGGAUauGGCGuaCCcGG- -5'
20568 3' -56.6 NC_004688.1 + 84381 0.66 0.818162
Target:  5'- -gGCCGACGCgaAUGCUGguccCGUGGaGCUu -3'
miRNA:   3'- ugUGGCUGCGgaUAUGGC----GUACC-CGG- -5'
20568 3' -56.6 NC_004688.1 + 73494 0.66 0.809323
Target:  5'- cACGCCG-CGCCc-UGCgGCG-GGGCa -3'
miRNA:   3'- -UGUGGCuGCGGauAUGgCGUaCCCGg -5'
20568 3' -56.6 NC_004688.1 + 26400 0.66 0.809323
Target:  5'- -uGCCGcCGCCgagGCCGCcgGagcugccggaccGGCCa -3'
miRNA:   3'- ugUGGCuGCGGauaUGGCGuaC------------CCGG- -5'
20568 3' -56.6 NC_004688.1 + 29226 0.66 0.800319
Target:  5'- -gGCCGGCGUUguugaaAUUGuCGUGGGCCg -3'
miRNA:   3'- ugUGGCUGCGGaua---UGGC-GUACCCGG- -5'
20568 3' -56.6 NC_004688.1 + 39213 0.66 0.800319
Target:  5'- cCACCGccuccuccaGCGCCUGgguUACCGCcgGuuuGGUCg -3'
miRNA:   3'- uGUGGC---------UGCGGAU---AUGGCGuaC---CCGG- -5'
20568 3' -56.6 NC_004688.1 + 20897 0.67 0.781849
Target:  5'- uCGCCGGCGaCCgcaACgGcCGUGGGCg -3'
miRNA:   3'- uGUGGCUGC-GGauaUGgC-GUACCCGg -5'
20568 3' -56.6 NC_004688.1 + 22878 0.67 0.781849
Target:  5'- cCGCCGcgGCGCCUAccccUACCGCcgcGGCg -3'
miRNA:   3'- uGUGGC--UGCGGAU----AUGGCGuacCCGg -5'
20568 3' -56.6 NC_004688.1 + 61953 0.67 0.781849
Target:  5'- --cCCGACGU---UGCCGCGcGGGUCg -3'
miRNA:   3'- uguGGCUGCGgauAUGGCGUaCCCGG- -5'
20568 3' -56.6 NC_004688.1 + 49143 0.67 0.776197
Target:  5'- uGCGCCG-CGCCgcgGCCGaCGugauuuuggcggaucUGGGCg -3'
miRNA:   3'- -UGUGGCuGCGGauaUGGC-GU---------------ACCCGg -5'
20568 3' -56.6 NC_004688.1 + 17673 0.67 0.772402
Target:  5'- --uCCGGCGCgg--GCCGCuuggcGGGCCg -3'
miRNA:   3'- uguGGCUGCGgauaUGGCGua---CCCGG- -5'
20568 3' -56.6 NC_004688.1 + 103786 0.67 0.766671
Target:  5'- cACGCCGuACGaaCUAgguaaggcuuggggaUACCGCGgcGGGCCg -3'
miRNA:   3'- -UGUGGC-UGCg-GAU---------------AUGGCGUa-CCCGG- -5'
20568 3' -56.6 NC_004688.1 + 74368 0.67 0.762826
Target:  5'- cACACCcgggaGAUGCCgaugAUGCCGUcggacUGGcGCCa -3'
miRNA:   3'- -UGUGG-----CUGCGGa---UAUGGCGu----ACC-CGG- -5'
20568 3' -56.6 NC_004688.1 + 23325 0.67 0.762826
Target:  5'- cGCGCCGGCGaugcCCgugGUcaGCCGCAUGauuuccGGCUg -3'
miRNA:   3'- -UGUGGCUGC----GGa--UA--UGGCGUAC------CCGG- -5'
20568 3' -56.6 NC_004688.1 + 81771 0.67 0.762826
Target:  5'- uACuCC-ACGuCCUcgGCCGCGccGGGCCu -3'
miRNA:   3'- -UGuGGcUGC-GGAuaUGGCGUa-CCCGG- -5'
20568 3' -56.6 NC_004688.1 + 65589 0.67 0.762826
Target:  5'- -gGCCGuacccCGCCU--GCCGCAUccccGGCCa -3'
miRNA:   3'- ugUGGCu----GCGGAuaUGGCGUAc---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.