miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20571 5' -50.8 NC_004688.1 + 33842 0.66 0.973375
Target:  5'- --cGCCGUGGCCGCccaUGACCu---- -3'
miRNA:   3'- auaCGGUAUCGGUGca-ACUGGuguua -5'
20571 5' -50.8 NC_004688.1 + 50197 0.66 0.963536
Target:  5'- gGUGCCcgAGCgCugGUggaacACCGCGAUa -3'
miRNA:   3'- aUACGGuaUCG-GugCAac---UGGUGUUA- -5'
20571 5' -50.8 NC_004688.1 + 92035 0.66 0.959755
Target:  5'- --cGCCGggGGCCGCcccaugccUGACCACGAg -3'
miRNA:   3'- auaCGGUa-UCGGUGca------ACUGGUGUUa -5'
20571 5' -50.8 NC_004688.1 + 80081 0.68 0.911533
Target:  5'- --gGCCAUAggggcauucggugcGCCGCG-UGGCCACGu- -3'
miRNA:   3'- auaCGGUAU--------------CGGUGCaACUGGUGUua -5'
20571 5' -50.8 NC_004688.1 + 106687 0.68 0.906923
Target:  5'- aGUGCCGUAGCauccgcugaCACGUcGugCGCAu- -3'
miRNA:   3'- aUACGGUAUCG---------GUGCAaCugGUGUua -5'
20571 5' -50.8 NC_004688.1 + 28742 0.68 0.904906
Target:  5'- cGUGCCAUcgaGGCCGCGcgcagggaccggcuUUGACCAg--- -3'
miRNA:   3'- aUACGGUA---UCGGUGC--------------AACUGGUguua -5'
20571 5' -50.8 NC_004688.1 + 53214 0.69 0.900101
Target:  5'- --cGCCAggugGGCUACG--GACCGCGGUa -3'
miRNA:   3'- auaCGGUa---UCGGUGCaaCUGGUGUUA- -5'
20571 5' -50.8 NC_004688.1 + 86863 0.69 0.899404
Target:  5'- aGUGCCGUcGCCguugcugaugaagACGUUGACgGCAc- -3'
miRNA:   3'- aUACGGUAuCGG-------------UGCAACUGgUGUua -5'
20571 5' -50.8 NC_004688.1 + 36851 0.69 0.870118
Target:  5'- gGUGCCggugGUGGUCGCGUUcagauacgaGGCCGCGAc -3'
miRNA:   3'- aUACGG----UAUCGGUGCAA---------CUGGUGUUa -5'
20571 5' -50.8 NC_004688.1 + 9833 0.7 0.82704
Target:  5'- -cUGCCGUAGCUACGU---CCGCGGg -3'
miRNA:   3'- auACGGUAUCGGUGCAacuGGUGUUa -5'
20571 5' -50.8 NC_004688.1 + 44774 0.74 0.627594
Target:  5'- gGUGCCc--GCCGCGguggUGGCCGCGAa -3'
miRNA:   3'- aUACGGuauCGGUGCa---ACUGGUGUUa -5'
20571 5' -50.8 NC_004688.1 + 107109 1.04 0.010526
Target:  5'- cUAUGCCAUAGCCACGUUGACCACAAUc -3'
miRNA:   3'- -AUACGGUAUCGGUGCAACUGGUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.