Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20571 | 5' | -50.8 | NC_004688.1 | + | 107109 | 1.04 | 0.010526 |
Target: 5'- cUAUGCCAUAGCCACGUUGACCACAAUc -3' miRNA: 3'- -AUACGGUAUCGGUGCAACUGGUGUUA- -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 50197 | 0.66 | 0.963536 |
Target: 5'- gGUGCCcgAGCgCugGUggaacACCGCGAUa -3' miRNA: 3'- aUACGGuaUCG-GugCAac---UGGUGUUA- -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 92035 | 0.66 | 0.959755 |
Target: 5'- --cGCCGggGGCCGCcccaugccUGACCACGAg -3' miRNA: 3'- auaCGGUa-UCGGUGca------ACUGGUGUUa -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 80081 | 0.68 | 0.911533 |
Target: 5'- --gGCCAUAggggcauucggugcGCCGCG-UGGCCACGu- -3' miRNA: 3'- auaCGGUAU--------------CGGUGCaACUGGUGUua -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 106687 | 0.68 | 0.906923 |
Target: 5'- aGUGCCGUAGCauccgcugaCACGUcGugCGCAu- -3' miRNA: 3'- aUACGGUAUCG---------GUGCAaCugGUGUua -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 28742 | 0.68 | 0.904906 |
Target: 5'- cGUGCCAUcgaGGCCGCGcgcagggaccggcuUUGACCAg--- -3' miRNA: 3'- aUACGGUA---UCGGUGC--------------AACUGGUguua -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 53214 | 0.69 | 0.900101 |
Target: 5'- --cGCCAggugGGCUACG--GACCGCGGUa -3' miRNA: 3'- auaCGGUa---UCGGUGCaaCUGGUGUUA- -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 86863 | 0.69 | 0.899404 |
Target: 5'- aGUGCCGUcGCCguugcugaugaagACGUUGACgGCAc- -3' miRNA: 3'- aUACGGUAuCGG-------------UGCAACUGgUGUua -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 36851 | 0.69 | 0.870118 |
Target: 5'- gGUGCCggugGUGGUCGCGUUcagauacgaGGCCGCGAc -3' miRNA: 3'- aUACGG----UAUCGGUGCAA---------CUGGUGUUa -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 9833 | 0.7 | 0.82704 |
Target: 5'- -cUGCCGUAGCUACGU---CCGCGGg -3' miRNA: 3'- auACGGUAUCGGUGCAacuGGUGUUa -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 44774 | 0.74 | 0.627594 |
Target: 5'- gGUGCCc--GCCGCGguggUGGCCGCGAa -3' miRNA: 3'- aUACGGuauCGGUGCa---ACUGGUGUUa -5' |
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20571 | 5' | -50.8 | NC_004688.1 | + | 33842 | 0.66 | 0.973375 |
Target: 5'- --cGCCGUGGCCGCccaUGACCu---- -3' miRNA: 3'- auaCGGUAUCGGUGca-ACUGGuguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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