miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20572 3' -54.5 NC_004688.1 + 107994 0.66 0.896852
Target:  5'- aGUGGcgcagcAUCCGCuAGCCGUacggauguaccucaaUGCgCGCAa -3'
miRNA:   3'- -CACCa-----UAGGCGuUUGGCA---------------ACGgGCGU- -5'
20572 3' -54.5 NC_004688.1 + 89884 0.66 0.887133
Target:  5'- -cGGcUcgCCGCcuGGCCGggGUCCGCu -3'
miRNA:   3'- caCC-AuaGGCGu-UUGGCaaCGGGCGu -5'
20572 3' -54.5 NC_004688.1 + 87927 0.66 0.879899
Target:  5'- ----aAUCCGC-GACCGcagGCCCGCu -3'
miRNA:   3'- caccaUAGGCGuUUGGCaa-CGGGCGu -5'
20572 3' -54.5 NC_004688.1 + 92053 0.66 0.879899
Target:  5'- cGUGGgcgaugagAUCCGC--GCCGggGgCCGCc -3'
miRNA:   3'- -CACCa-------UAGGCGuuUGGCaaCgGGCGu -5'
20572 3' -54.5 NC_004688.1 + 20855 0.66 0.879899
Target:  5'- -gGGUAaccCUGCAGGCCGcgccaGUCCGCAc -3'
miRNA:   3'- caCCAUa--GGCGUUUGGCaa---CGGGCGU- -5'
20572 3' -54.5 NC_004688.1 + 34449 0.66 0.872427
Target:  5'- aGUGGUcAUCCaacgucaacggGCGAACCGUgccGCCCa-- -3'
miRNA:   3'- -CACCA-UAGG-----------CGUUUGGCAa--CGGGcgu -5'
20572 3' -54.5 NC_004688.1 + 3768 0.67 0.856793
Target:  5'- -gGGUuUCUGCGAcccuuCCGUUGgCCGCc -3'
miRNA:   3'- caCCAuAGGCGUUu----GGCAACgGGCGu -5'
20572 3' -54.5 NC_004688.1 + 98858 0.68 0.786137
Target:  5'- aGUGGcuucgAUCCuGCGAAgCGgccacgGCCCGCGg -3'
miRNA:   3'- -CACCa----UAGG-CGUUUgGCaa----CGGGCGU- -5'
20572 3' -54.5 NC_004688.1 + 24223 0.69 0.74693
Target:  5'- -cGGcGUCCGUcgcgcccguggGGACCGUUGCCgGUg -3'
miRNA:   3'- caCCaUAGGCG-----------UUUGGCAACGGgCGu -5'
20572 3' -54.5 NC_004688.1 + 35713 0.69 0.726634
Target:  5'- cUGGcUGUgCGCAGuGCCGUUGCCgUGCGc -3'
miRNA:   3'- cACC-AUAgGCGUU-UGGCAACGG-GCGU- -5'
20572 3' -54.5 NC_004688.1 + 57953 0.7 0.695557
Target:  5'- -----cUCCGCAGACCGcgGCCCGgGg -3'
miRNA:   3'- caccauAGGCGUUUGGCaaCGGGCgU- -5'
20572 3' -54.5 NC_004688.1 + 26082 0.7 0.674536
Target:  5'- -gGGUAgaccaCCGCcAGCCGcaccGCCCGCAg -3'
miRNA:   3'- caCCAUa----GGCGuUUGGCaa--CGGGCGU- -5'
20572 3' -54.5 NC_004688.1 + 24826 0.71 0.653365
Target:  5'- -aGGuUGUCCGcCAAGCCGgcuagGCCgCGCGa -3'
miRNA:   3'- caCC-AUAGGC-GUUUGGCaa---CGG-GCGU- -5'
20572 3' -54.5 NC_004688.1 + 34181 0.73 0.53747
Target:  5'- cGUGGUGUUCGacuuCAAACCGUUuGuCCCGUAc -3'
miRNA:   3'- -CACCAUAGGC----GUUUGGCAA-C-GGGCGU- -5'
20572 3' -54.5 NC_004688.1 + 108692 1.09 0.002525
Target:  5'- cGUGGUAUCCGCAAACCGUUGCCCGCAa -3'
miRNA:   3'- -CACCAUAGGCGUUUGGCAACGGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.