miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20572 5' -56.8 NC_004688.1 + 41579 0.66 0.843693
Target:  5'- cCGCuGCGUUGGCGGGGaugucaCGcCAGUGguuGACg -3'
miRNA:   3'- -GCG-CGCAGUUGCCCUg-----GC-GUCAU---CUG- -5'
20572 5' -56.8 NC_004688.1 + 99225 0.66 0.843693
Target:  5'- cCGCG-GUCAACaacguucgGGuGACCGCgcgAGUAGAa -3'
miRNA:   3'- -GCGCgCAGUUG--------CC-CUGGCG---UCAUCUg -5'
20572 5' -56.8 NC_004688.1 + 17164 0.66 0.843693
Target:  5'- gGCGCugcuuuacGUCAccCGGGACgGCGGUGaACa -3'
miRNA:   3'- gCGCG--------CAGUu-GCCCUGgCGUCAUcUG- -5'
20572 5' -56.8 NC_004688.1 + 86812 0.66 0.838764
Target:  5'- aGC-CGUCAcccggaucgucccgaACGGGACCGcCGGUcccGGCu -3'
miRNA:   3'- gCGcGCAGU---------------UGCCCUGGC-GUCAu--CUG- -5'
20572 5' -56.8 NC_004688.1 + 61941 0.66 0.835439
Target:  5'- gCGCGgGUCGuccAUGGccuuGCCGCGGaggAGACg -3'
miRNA:   3'- -GCGCgCAGU---UGCCc---UGGCGUCa--UCUG- -5'
20572 5' -56.8 NC_004688.1 + 108771 0.66 0.818371
Target:  5'- uCGCGCGgaaCuuUGGGACaggGCAGacaUGGACg -3'
miRNA:   3'- -GCGCGCa--GuuGCCCUGg--CGUC---AUCUG- -5'
20572 5' -56.8 NC_004688.1 + 6797 0.66 0.809574
Target:  5'- aGCGCGUCGuucaGGaagccGCCGCAGgccUGGGCc -3'
miRNA:   3'- gCGCGCAGUug--CCc----UGGCGUC---AUCUG- -5'
20572 5' -56.8 NC_004688.1 + 84730 0.67 0.782232
Target:  5'- uGgGUGUUGAUGGuGGCCaccCGGUAGACg -3'
miRNA:   3'- gCgCGCAGUUGCC-CUGGc--GUCAUCUG- -5'
20572 5' -56.8 NC_004688.1 + 90705 0.68 0.734035
Target:  5'- --gGUGUCGACGGGGCCGgucUGGAUa -3'
miRNA:   3'- gcgCGCAGUUGCCCUGGCgucAUCUG- -5'
20572 5' -56.8 NC_004688.1 + 105843 0.68 0.693794
Target:  5'- aGCGUGcauUUGACGGGGCCGCAcgauGAUg -3'
miRNA:   3'- gCGCGC---AGUUGCCCUGGCGUcau-CUG- -5'
20572 5' -56.8 NC_004688.1 + 31493 0.69 0.67332
Target:  5'- cCGCGCagaacguuGUC-GCGGGcgagGCCGgGGUGGACc -3'
miRNA:   3'- -GCGCG--------CAGuUGCCC----UGGCgUCAUCUG- -5'
20572 5' -56.8 NC_004688.1 + 84088 0.7 0.621687
Target:  5'- aGgGCGUCGcuGCGGuGGCCGCGGagcuugaGGGCu -3'
miRNA:   3'- gCgCGCAGU--UGCC-CUGGCGUCa------UCUG- -5'
20572 5' -56.8 NC_004688.1 + 58418 0.7 0.615485
Target:  5'- aGCGCGccuacugggugauccUCAugGGcACCGCGGUGuGGCu -3'
miRNA:   3'- gCGCGC---------------AGUugCCcUGGCGUCAU-CUG- -5'
20572 5' -56.8 NC_004688.1 + 46064 0.7 0.611352
Target:  5'- aCGUGcCG-CGGCGGGGCCGUuaugaGGUGuGACa -3'
miRNA:   3'- -GCGC-GCaGUUGCCCUGGCG-----UCAU-CUG- -5'
20572 5' -56.8 NC_004688.1 + 16200 0.71 0.549931
Target:  5'- uGUGCGUCGagcuggcgGCGGGGCCGUgcgcagcgGGaAGGCa -3'
miRNA:   3'- gCGCGCAGU--------UGCCCUGGCG--------UCaUCUG- -5'
20572 5' -56.8 NC_004688.1 + 83515 0.75 0.357458
Target:  5'- aGCGCGUCcagcgcauCGGGAaucacguaGCAGUAGACa -3'
miRNA:   3'- gCGCGCAGuu------GCCCUgg------CGUCAUCUG- -5'
20572 5' -56.8 NC_004688.1 + 108656 1.08 0.001943
Target:  5'- gCGCGCGUCAACGGGACCGCAGUAGACc -3'
miRNA:   3'- -GCGCGCAGUUGCCCUGGCGUCAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.