miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20573 5' -60.3 NC_004688.1 + 66294 0.66 0.690332
Target:  5'- cGGCGGGGCCGaucguguaCgUCC--AGUGCgGCg -3'
miRNA:   3'- -CCGCCCCGGCg-------GgGGGcuUUAUGaCG- -5'
20573 5' -60.3 NC_004688.1 + 30232 0.69 0.492154
Target:  5'- uGCGGGGaCuCGCCCCCCGcc---UUGUc -3'
miRNA:   3'- cCGCCCC-G-GCGGGGGGCuuuauGACG- -5'
20573 5' -60.3 NC_004688.1 + 102213 0.69 0.501626
Target:  5'- cGCGGGGCCGCCgUacauuucGUACUGUu -3'
miRNA:   3'- cCGCCCCGGCGGgGggcuu--UAUGACG- -5'
20573 5' -60.3 NC_004688.1 + 25351 0.68 0.511178
Target:  5'- aGUGGGaGCCGCCgCCCCacgccGAAUACUc- -3'
miRNA:   3'- cCGCCC-CGGCGG-GGGGc----UUUAUGAcg -5'
20573 5' -60.3 NC_004688.1 + 45402 0.68 0.511178
Target:  5'- aGGCcgugccacGGGUgGCCCUCCGGGAUGCg-- -3'
miRNA:   3'- -CCGc-------CCCGgCGGGGGGCUUUAUGacg -5'
20573 5' -60.3 NC_004688.1 + 37956 0.68 0.559957
Target:  5'- uGGCGcugaGGCCGCCccacaCCCCGAGGcGCaccgGCu -3'
miRNA:   3'- -CCGCc---CCGGCGG-----GGGGCUUUaUGa---CG- -5'
20573 5' -60.3 NC_004688.1 + 57429 0.68 0.559957
Target:  5'- cGGCGacGCCguGCCgCCCCGggGUcCUGUu -3'
miRNA:   3'- -CCGCccCGG--CGG-GGGGCuuUAuGACG- -5'
20573 5' -60.3 NC_004688.1 + 31990 0.67 0.569881
Target:  5'- -aCGGGGa-GCCCCaggaCGGAGUcCUGCa -3'
miRNA:   3'- ccGCCCCggCGGGGg---GCUUUAuGACG- -5'
20573 5' -60.3 NC_004688.1 + 109951 0.67 0.588848
Target:  5'- cGC-GGGCCGCCCaagCGAGGUgaucguuccugccGCUGCc -3'
miRNA:   3'- cCGcCCCGGCGGGgg-GCUUUA-------------UGACG- -5'
20573 5' -60.3 NC_004688.1 + 22129 0.69 0.492154
Target:  5'- cGGcCGGGGCCGCCgcucuaCCCGcag-GgaGCa -3'
miRNA:   3'- -CC-GCCCCGGCGGg-----GGGCuuuaUgaCG- -5'
20573 5' -60.3 NC_004688.1 + 12753 0.69 0.473464
Target:  5'- gGGCGGGcGUCGCaCCCCGGAuu-C-GCa -3'
miRNA:   3'- -CCGCCC-CGGCGgGGGGCUUuauGaCG- -5'
20573 5' -60.3 NC_004688.1 + 75024 0.69 0.464253
Target:  5'- gGGCGGGGCga-UCCCCGA----CUGCu -3'
miRNA:   3'- -CCGCCCCGgcgGGGGGCUuuauGACG- -5'
20573 5' -60.3 NC_004688.1 + 68870 0.72 0.346369
Target:  5'- cGGCGGGGUCGCCggUCCgGAcGUAgUGg -3'
miRNA:   3'- -CCGCCCCGGCGG--GGGgCUuUAUgACg -5'
20573 5' -60.3 NC_004688.1 + 62104 0.71 0.385941
Target:  5'- uGCGGGGggccucguCCGCCgCCaucgCCGAGAaGCUGCu -3'
miRNA:   3'- cCGCCCC--------GGCGG-GG----GGCUUUaUGACG- -5'
20573 5' -60.3 NC_004688.1 + 57342 0.7 0.419676
Target:  5'- aGCGGGcGCCGCUaCCCGAGGggcuuuugggGCUGg -3'
miRNA:   3'- cCGCCC-CGGCGGgGGGCUUUa---------UGACg -5'
20573 5' -60.3 NC_004688.1 + 73235 0.7 0.419676
Target:  5'- cGGUcgccgGGGGCCGCCCCUCG----GCgGUg -3'
miRNA:   3'- -CCG-----CCCCGGCGGGGGGCuuuaUGaCG- -5'
20573 5' -60.3 NC_004688.1 + 32070 0.7 0.425761
Target:  5'- gGGCGGGGCgGCcagcauuaggcucuCCCCCGA-----UGCc -3'
miRNA:   3'- -CCGCCCCGgCG--------------GGGGGCUuuaugACG- -5'
20573 5' -60.3 NC_004688.1 + 95856 0.7 0.428385
Target:  5'- uGGCGGGGUC-CCCCCUGuccgAUgGCc -3'
miRNA:   3'- -CCGCCCCGGcGGGGGGCuuuaUGaCG- -5'
20573 5' -60.3 NC_004688.1 + 84558 0.7 0.446118
Target:  5'- cGCcGaGGCCGCCgCCCUGGG--GCUGCc -3'
miRNA:   3'- cCGcC-CCGGCGG-GGGGCUUuaUGACG- -5'
20573 5' -60.3 NC_004688.1 + 45272 0.69 0.457861
Target:  5'- cGGCGGGccguaccccgccuGCCGCauccccggccaguaaUCCCCGAGGUGCaggGUg -3'
miRNA:   3'- -CCGCCC-------------CGGCG---------------GGGGGCUUUAUGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.