Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20573 | 5' | -60.3 | NC_004688.1 | + | 102213 | 0.69 | 0.501626 |
Target: 5'- cGCGGGGCCGCCgUacauuucGUACUGUu -3' miRNA: 3'- cCGCCCCGGCGGgGggcuu--UAUGACG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 30232 | 0.69 | 0.492154 |
Target: 5'- uGCGGGGaCuCGCCCCCCGcc---UUGUc -3' miRNA: 3'- cCGCCCC-G-GCGGGGGGCuuuauGACG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 22129 | 0.69 | 0.492154 |
Target: 5'- cGGcCGGGGCCGCCgcucuaCCCGcag-GgaGCa -3' miRNA: 3'- -CC-GCCCCGGCGGg-----GGGCuuuaUgaCG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 12753 | 0.69 | 0.473464 |
Target: 5'- gGGCGGGcGUCGCaCCCCGGAuu-C-GCa -3' miRNA: 3'- -CCGCCC-CGGCGgGGGGCUUuauGaCG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 75024 | 0.69 | 0.464253 |
Target: 5'- gGGCGGGGCga-UCCCCGA----CUGCu -3' miRNA: 3'- -CCGCCCCGgcgGGGGGCUuuauGACG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 45272 | 0.69 | 0.457861 |
Target: 5'- cGGCGGGccguaccccgccuGCCGCauccccggccaguaaUCCCCGAGGUGCaggGUg -3' miRNA: 3'- -CCGCCC-------------CGGCG---------------GGGGGCUUUAUGa--CG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 84558 | 0.7 | 0.446118 |
Target: 5'- cGCcGaGGCCGCCgCCCUGGG--GCUGCc -3' miRNA: 3'- cCGcC-CCGGCGG-GGGGCUUuaUGACG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 95856 | 0.7 | 0.428385 |
Target: 5'- uGGCGGGGUC-CCCCCUGuccgAUgGCc -3' miRNA: 3'- -CCGCCCCGGcGGGGGGCuuuaUGaCG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 32070 | 0.7 | 0.425761 |
Target: 5'- gGGCGGGGCgGCcagcauuaggcucuCCCCCGA-----UGCc -3' miRNA: 3'- -CCGCCCCGgCG--------------GGGGGCUuuaugACG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 73235 | 0.7 | 0.419676 |
Target: 5'- cGGUcgccgGGGGCCGCCCCUCG----GCgGUg -3' miRNA: 3'- -CCG-----CCCCGGCGGGGGGCuuuaUGaCG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 57342 | 0.7 | 0.419676 |
Target: 5'- aGCGGGcGCCGCUaCCCGAGGggcuuuugggGCUGg -3' miRNA: 3'- cCGCCC-CGGCGGgGGGCUUUa---------UGACg -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 62104 | 0.71 | 0.385941 |
Target: 5'- uGCGGGGggccucguCCGCCgCCaucgCCGAGAaGCUGCu -3' miRNA: 3'- cCGCCCC--------GGCGG-GG----GGCUUUaUGACG- -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 68870 | 0.72 | 0.346369 |
Target: 5'- cGGCGGGGUCGCCggUCCgGAcGUAgUGg -3' miRNA: 3'- -CCGCCCCGGCGG--GGGgCUuUAUgACg -5' |
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20573 | 5' | -60.3 | NC_004688.1 | + | 36972 | 0.72 | 0.338062 |
Target: 5'- cGGCguugaauGGGGuCCaGCCCCCCGAGGgg--GCg -3' miRNA: 3'- -CCG-------CCCC-GG-CGGGGGGCUUUaugaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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