miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20574 3' -63.5 NC_004688.1 + 96039 0.66 0.496697
Target:  5'- cCGGCGGCauuaaaCCUcGCGACUGG-GCcuGCc -3'
miRNA:   3'- -GCCGUCGg-----GGA-CGCUGACCaCGccCG- -5'
20574 3' -63.5 NC_004688.1 + 51926 0.66 0.484603
Target:  5'- gGGUgcgauggaugaccuGGUCCCUGCG-CUGGgaGCuGGCg -3'
miRNA:   3'- gCCG--------------UCGGGGACGCuGACCa-CGcCCG- -5'
20574 3' -63.5 NC_004688.1 + 109831 0.66 0.469004
Target:  5'- gCGGCGuacuacGCCCCcGCGAgUcaaaGGgcuaagacaUGCGGGCg -3'
miRNA:   3'- -GCCGU------CGGGGaCGCUgA----CC---------ACGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 7942 0.66 0.469004
Target:  5'- uCGGCuagAGCUaucgCgggcGCGACUGGauaaGCGGGCg -3'
miRNA:   3'- -GCCG---UCGGg---Ga---CGCUGACCa---CGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 30372 0.66 0.469004
Target:  5'- gCGGgAGCCgCCgaagGCGAgCaGGUGCccaccGGGCu -3'
miRNA:   3'- -GCCgUCGG-GGa---CGCU-GaCCACG-----CCCG- -5'
20574 3' -63.5 NC_004688.1 + 71074 0.66 0.45995
Target:  5'- gGuGCGGCgUCUGCGACUGc-GgGGGUg -3'
miRNA:   3'- gC-CGUCGgGGACGCUGACcaCgCCCG- -5'
20574 3' -63.5 NC_004688.1 + 52943 0.67 0.433359
Target:  5'- gGGCuGCUggCCUGUGGC-GGUGUaGGCg -3'
miRNA:   3'- gCCGuCGG--GGACGCUGaCCACGcCCG- -5'
20574 3' -63.5 NC_004688.1 + 11425 0.67 0.433359
Target:  5'- -aGCGGCCCUccGUGGaugUGGUGaCGGGCc -3'
miRNA:   3'- gcCGUCGGGGa-CGCUg--ACCAC-GCCCG- -5'
20574 3' -63.5 NC_004688.1 + 44706 0.68 0.382984
Target:  5'- aGGCuGGCCCCUGuCGAUauccagGG-GCuuGGGCg -3'
miRNA:   3'- gCCG-UCGGGGAC-GCUGa-----CCaCG--CCCG- -5'
20574 3' -63.5 NC_004688.1 + 91800 0.68 0.367079
Target:  5'- cCGGCgugggcguguucGGCCCCaugGCGAUcGGcUGCcGGGCc -3'
miRNA:   3'- -GCCG------------UCGGGGa--CGCUGaCC-ACG-CCCG- -5'
20574 3' -63.5 NC_004688.1 + 67389 0.68 0.367079
Target:  5'- aGGUuGCCCa-G-GAC-GGUGCGGGCg -3'
miRNA:   3'- gCCGuCGGGgaCgCUGaCCACGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 18837 0.69 0.344086
Target:  5'- gGGCcGCCCCaUGCcuGACcacgaGG-GCGGGCa -3'
miRNA:   3'- gCCGuCGGGG-ACG--CUGa----CCaCGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 104094 0.69 0.322147
Target:  5'- aGGCcugGGCCUCUuCgGACUGGUuCGGGCu -3'
miRNA:   3'- gCCG---UCGGGGAcG-CUGACCAcGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 93867 0.69 0.320722
Target:  5'- gGuGCAGCCCauacccagucCGGCcgcGGUGCGGGCg -3'
miRNA:   3'- gC-CGUCGGGgac-------GCUGa--CCACGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 47657 0.7 0.274451
Target:  5'- gCGGCAGUCUgUcgccaccGCGACUGGUcCGGGg -3'
miRNA:   3'- -GCCGUCGGGgA-------CGCUGACCAcGCCCg -5'
20574 3' -63.5 NC_004688.1 + 48121 0.72 0.217603
Target:  5'- cCGGCucgacuCCCC-GCGACUGGUGCGcacGCa -3'
miRNA:   3'- -GCCGuc----GGGGaCGCUGACCACGCc--CG- -5'
20574 3' -63.5 NC_004688.1 + 105466 0.72 0.215532
Target:  5'- cCGGCcucgcgaAGCCCCUggauaaauccguacGCGcaaaUGGUGUGGGCa -3'
miRNA:   3'- -GCCG-------UCGGGGA--------------CGCug--ACCACGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 37760 0.72 0.202481
Target:  5'- gGGCuuuuagauGCUCCUG-GACUGGcccaGCGGGCa -3'
miRNA:   3'- gCCGu-------CGGGGACgCUGACCa---CGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 102 0.74 0.142044
Target:  5'- cCGGCGGCCCUuugaccugcgguuuUGCGuuugcaaggauuaGCUGacGUGCGGGCu -3'
miRNA:   3'- -GCCGUCGGGG--------------ACGC-------------UGAC--CACGCCCG- -5'
20574 3' -63.5 NC_004688.1 + 35251 0.77 0.095546
Target:  5'- uCGGCAGCgccgaacgacCCCUGCGACggGGUGUcGGCc -3'
miRNA:   3'- -GCCGUCG----------GGGACGCUGa-CCACGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.