Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20575 | 3' | -54.1 | NC_004688.1 | + | 8474 | 0.67 | 0.882168 |
Target: 5'- aCCUGaccguugagCAGGuGUgGCCGGCGgaGCAGGUg -3' miRNA: 3'- -GGACaa-------GUCC-CAaCGGCUGC--CGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 10184 | 0.7 | 0.761378 |
Target: 5'- -aUGUUCGcGGGgcugucGCUGACGGC-GGCa -3' miRNA: 3'- ggACAAGU-CCCaa----CGGCUGCCGuUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 17997 | 0.67 | 0.896107 |
Target: 5'- aCCUGggcguugCGGGGUUGUCG-UGGUcuuGCu -3' miRNA: 3'- -GGACaa-----GUCCCAACGGCuGCCGuu-CG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 20991 | 0.68 | 0.851522 |
Target: 5'- gCCUGgcCGGGGUccgcuuccgugGCCGACGGgGAu- -3' miRNA: 3'- -GGACaaGUCCCAa----------CGGCUGCCgUUcg -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 27050 | 0.66 | 0.909073 |
Target: 5'- aCCgug-CAGGcguaGUUGCUGuuGGCGGGCg -3' miRNA: 3'- -GGacaaGUCC----CAACGGCugCCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 30365 | 0.66 | 0.909073 |
Target: 5'- gCCagGUgCGGGaGccGCCGAaGGCGAGCa -3' miRNA: 3'- -GGa-CAaGUCC-CaaCGGCUgCCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 32918 | 0.68 | 0.834912 |
Target: 5'- --gGUUCGauGGGUgGCCgGGCGGCGGGa -3' miRNA: 3'- ggaCAAGU--CCCAaCGG-CUGCCGUUCg -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 46827 | 0.69 | 0.799422 |
Target: 5'- gCCUGggCAGGGaccugacacgGCCGA--GCGAGCu -3' miRNA: 3'- -GGACaaGUCCCaa--------CGGCUgcCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 59682 | 0.75 | 0.464821 |
Target: 5'- aCUGcaUCugcGGGUgGUCGGCGGCAGGCg -3' miRNA: 3'- gGACa-AGu--CCCAaCGGCUGCCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 64585 | 0.72 | 0.648695 |
Target: 5'- --gGUUguGGGUUGCgaCGACGGCAcGGUu -3' miRNA: 3'- ggaCAAguCCCAACG--GCUGCCGU-UCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 68863 | 0.66 | 0.932004 |
Target: 5'- gCCUGggcggCGGGGUcGCCGGuccggacguagUGGUAgccGGCg -3' miRNA: 3'- -GGACaa---GUCCCAaCGGCU-----------GCCGU---UCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 71163 | 0.8 | 0.26998 |
Target: 5'- uCCUGUUgGGGGUggGCCGucCGGCGGGg -3' miRNA: 3'- -GGACAAgUCCCAa-CGGCu-GCCGUUCg -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 88277 | 0.67 | 0.874845 |
Target: 5'- uCUUGUcgaggUCGGccUUGCCGGCGGCAAccuGCu -3' miRNA: 3'- -GGACA-----AGUCccAACGGCUGCCGUU---CG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 90123 | 0.67 | 0.902713 |
Target: 5'- cCUUGUUCcagcuGGaGUUGCCG-CGGUuacgcAGCg -3' miRNA: 3'- -GGACAAGu----CC-CAACGGCuGCCGu----UCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 92736 | 0.74 | 0.52393 |
Target: 5'- gCCUccUCGGcGGUgaaGCCGugGGUGAGCg -3' miRNA: 3'- -GGAcaAGUC-CCAa--CGGCugCCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 93105 | 0.69 | 0.817523 |
Target: 5'- aCCU-UUCGGGGgccGCCcGCGGC-GGCg -3' miRNA: 3'- -GGAcAAGUCCCaa-CGGcUGCCGuUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 93913 | 0.76 | 0.409374 |
Target: 5'- gCCUGUUCGGG---GCCGcUGGCGGGCu -3' miRNA: 3'- -GGACAAGUCCcaaCGGCuGCCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 94183 | 0.66 | 0.921043 |
Target: 5'- aCUGcggUAGGGUUGgggcaUCG-CGGCGGGCc -3' miRNA: 3'- gGACaa-GUCCCAAC-----GGCuGCCGUUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 95853 | 0.66 | 0.909073 |
Target: 5'- cUCUGg-CGGGGUccccccUGuCCGAUGGCcacAAGCa -3' miRNA: 3'- -GGACaaGUCCCA------AC-GGCUGCCG---UUCG- -5' |
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20575 | 3' | -54.1 | NC_004688.1 | + | 97545 | 0.66 | 0.915183 |
Target: 5'- gCUGUccaauucgUCAGGGUcG-CGGCGGUAgAGCc -3' miRNA: 3'- gGACA--------AGUCCCAaCgGCUGCCGU-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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