Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 60828 | 0.67 | 0.573471 |
Target: 5'- cGGAUCGaCCAGCG-CAACCCCa---- -3' miRNA: 3'- cUCUAGC-GGUCGCgGUUGGGGcguga -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 37268 | 0.68 | 0.54318 |
Target: 5'- uGGGAUCGaugCGGgGCCGGgCCCGCGg- -3' miRNA: 3'- -CUCUAGCg--GUCgCGGUUgGGGCGUga -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 28560 | 0.68 | 0.54318 |
Target: 5'- gGAGGUUGUgCAGCGCC-ACCCggucgaGCGCg -3' miRNA: 3'- -CUCUAGCG-GUCGCGGuUGGGg-----CGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 49997 | 0.68 | 0.533196 |
Target: 5'- -cGAUCGCCAcGCagauCCAGCCCUGCu-- -3' miRNA: 3'- cuCUAGCGGU-CGc---GGUUGGGGCGuga -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 71689 | 0.68 | 0.533196 |
Target: 5'- -uGGUCGgCGGCGCUggacccguuGGCCCCgGCACc -3' miRNA: 3'- cuCUAGCgGUCGCGG---------UUGGGG-CGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 4804 | 0.68 | 0.513433 |
Target: 5'- aGGGAaaUCGCCGGCGCUAugCa-GUACg -3' miRNA: 3'- -CUCU--AGCGGUCGCGGUugGggCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 31709 | 0.68 | 0.511473 |
Target: 5'- uGGcgCGCCugguuguagagcGCGCCGACCUCGuCGCUa -3' miRNA: 3'- cUCuaGCGGu-----------CGCGGUUGGGGC-GUGA- -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 87981 | 0.68 | 0.503664 |
Target: 5'- cAGGUCGCCgccgcGGCGCCuACCCCuacCGCc -3' miRNA: 3'- cUCUAGCGG-----UCGCGGuUGGGGc--GUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 66546 | 0.68 | 0.500749 |
Target: 5'- aGAGGUCGCCGGCGUUGGCgaaaucuaggacgaUCCGC-CUc -3' miRNA: 3'- -CUCUAGCGGUCGCGGUUG--------------GGGCGuGA- -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 59181 | 0.69 | 0.493977 |
Target: 5'- -uGAUCGCgguuCAGCGCCGACaCCgGCGg- -3' miRNA: 3'- cuCUAGCG----GUCGCGGUUG-GGgCGUga -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 66303 | 0.69 | 0.474864 |
Target: 5'- -cGAUCGUguacguccagugCGGCGCCuucgGGCCCUGCACc -3' miRNA: 3'- cuCUAGCG------------GUCGCGG----UUGGGGCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 33407 | 0.69 | 0.474864 |
Target: 5'- -cGGUCGaUCAcCGCCAGCCCCGUggGCUc -3' miRNA: 3'- cuCUAGC-GGUcGCGGUUGGGGCG--UGA- -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 75111 | 0.69 | 0.456128 |
Target: 5'- cGAGAaCGCCugcAGCGUC-ACCCCGCuCg -3' miRNA: 3'- -CUCUaGCGG---UCGCGGuUGGGGCGuGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 34920 | 0.69 | 0.446911 |
Target: 5'- -uGGUgGCCGGCGCUucucGCCUgGCACg -3' miRNA: 3'- cuCUAgCGGUCGCGGu---UGGGgCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 19562 | 0.7 | 0.428792 |
Target: 5'- cGGGAUgGacagaacaucaaCCGGCGCgAACUCCGCGCa -3' miRNA: 3'- -CUCUAgC------------GGUCGCGgUUGGGGCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 79345 | 0.7 | 0.419897 |
Target: 5'- aGGGGUCGUcauagCAGCgGCgCAACCuCCGCGCa -3' miRNA: 3'- -CUCUAGCG-----GUCG-CG-GUUGG-GGCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 68873 | 0.7 | 0.414614 |
Target: 5'- cGGGGUCGCCGGUccggacguagugguaGCCGgcgaggaucaGCCCCGC-CUu -3' miRNA: 3'- -CUCUAGCGGUCG---------------CGGU----------UGGGGCGuGA- -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 52053 | 0.7 | 0.402446 |
Target: 5'- --cGUCGCCGGCGCCGgggccaucgccACCaCCGCGg- -3' miRNA: 3'- cucUAGCGGUCGCGGU-----------UGG-GGCGUga -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 108692 | 0.7 | 0.402446 |
Target: 5'- aGAGAUgGCCaagugcgggguuGGCGCUGgcgaucuccGCCCCGCGCc -3' miRNA: 3'- -CUCUAgCGG------------UCGCGGU---------UGGGGCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 45169 | 0.7 | 0.393895 |
Target: 5'- cGGGGUCGcCCGGCGCCuagcuugcGGCCUcggcgaCGCGCUg -3' miRNA: 3'- -CUCUAGC-GGUCGCGG--------UUGGG------GCGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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