miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20579 5' -54.4 NC_004688.1 + 79465 0.66 0.888299
Target:  5'- uUGCCCgcggACACCGUUggcaGCGCGcUACcGAc -3'
miRNA:   3'- cACGGG----UGUGGUAAa---CGCGC-AUGcCU- -5'
20579 5' -54.4 NC_004688.1 + 104327 0.67 0.873682
Target:  5'- -gGCCCGC-CCuc--GgGCGUGCGGu -3'
miRNA:   3'- caCGGGUGuGGuaaaCgCGCAUGCCu -5'
20579 5' -54.4 NC_004688.1 + 54817 0.67 0.866022
Target:  5'- uUGCCUgGCGCUcgcgGgGCGUGCGGAa -3'
miRNA:   3'- cACGGG-UGUGGuaaaCgCGCAUGCCU- -5'
20579 5' -54.4 NC_004688.1 + 47767 0.67 0.850028
Target:  5'- -gGaCCCGCACC--UUGCGaugGUugGGAa -3'
miRNA:   3'- caC-GGGUGUGGuaAACGCg--CAugCCU- -5'
20579 5' -54.4 NC_004688.1 + 93872 0.67 0.841708
Target:  5'- -aGCCCAUACCcaguccgGcCGCgGUGCGGGc -3'
miRNA:   3'- caCGGGUGUGGuaaa---C-GCG-CAUGCCU- -5'
20579 5' -54.4 NC_004688.1 + 77234 0.67 0.841708
Target:  5'- -cGCCCACGCCGccaGCGCc--CGGGu -3'
miRNA:   3'- caCGGGUGUGGUaaaCGCGcauGCCU- -5'
20579 5' -54.4 NC_004688.1 + 69131 0.68 0.833183
Target:  5'- aUGCCCAgGCCGUg---GCGUACGa- -3'
miRNA:   3'- cACGGGUgUGGUAaacgCGCAUGCcu -5'
20579 5' -54.4 NC_004688.1 + 58985 0.68 0.824462
Target:  5'- aGUGCCgCGCACCug--GUcggucgucgaugGCGUAUGGAc -3'
miRNA:   3'- -CACGG-GUGUGGuaaaCG------------CGCAUGCCU- -5'
20579 5' -54.4 NC_004688.1 + 15384 0.68 0.806463
Target:  5'- -gGCCC-CGCCAUUccgGCGgGUAauccCGGAg -3'
miRNA:   3'- caCGGGuGUGGUAAa--CGCgCAU----GCCU- -5'
20579 5' -54.4 NC_004688.1 + 82990 0.68 0.797204
Target:  5'- -gGUCCugACCGUg---GCGUACGGGu -3'
miRNA:   3'- caCGGGugUGGUAaacgCGCAUGCCU- -5'
20579 5' -54.4 NC_004688.1 + 96744 0.69 0.768501
Target:  5'- -cGCCCGCGgCGUgcagcucaugucUUGgGCGUGCaGGAa -3'
miRNA:   3'- caCGGGUGUgGUA------------AACgCGCAUG-CCU- -5'
20579 5' -54.4 NC_004688.1 + 45497 0.7 0.728449
Target:  5'- gGUGCcguggucuaCCACgACCAUUUGCGgG-ACGGGg -3'
miRNA:   3'- -CACG---------GGUG-UGGUAAACGCgCaUGCCU- -5'
20579 5' -54.4 NC_004688.1 + 27862 0.7 0.718187
Target:  5'- --uCCCACACCAguuugGCGgggaGUGCGGAc -3'
miRNA:   3'- cacGGGUGUGGUaaa--CGCg---CAUGCCU- -5'
20579 5' -54.4 NC_004688.1 + 46454 0.71 0.623455
Target:  5'- cGUGaCCCAUcCgAUUUGCGCcGUGCGGu -3'
miRNA:   3'- -CAC-GGGUGuGgUAAACGCG-CAUGCCu -5'
20579 5' -54.4 NC_004688.1 + 2192 0.72 0.612842
Target:  5'- uUGCCCGCaAUCAUgucggcGCGCGUcaACGGGa -3'
miRNA:   3'- cACGGGUG-UGGUAaa----CGCGCA--UGCCU- -5'
20579 5' -54.4 NC_004688.1 + 23628 0.73 0.529158
Target:  5'- -cGCCCACGCCA---GgGCGU-CGGAa -3'
miRNA:   3'- caCGGGUGUGGUaaaCgCGCAuGCCU- -5'
20579 5' -54.4 NC_004688.1 + 11368 0.73 0.508834
Target:  5'- uUGUCCGCAUCGcgcagaagGCGCGUGCGGc -3'
miRNA:   3'- cACGGGUGUGGUaaa-----CGCGCAUGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.