miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2058 3' -50.6 NC_001348.1 + 53916 0.66 0.990019
Target:  5'- aACAGgUCCCUcgUcGGGAAaucgagaaacCACCCUa -3'
miRNA:   3'- gUGUC-AGGGAuaAuUCCUU----------GUGGGGg -5'
2058 3' -50.6 NC_001348.1 + 52562 0.66 0.989187
Target:  5'- uCGCAGUCgCUAUauuGGcuguucauuguuccaAACACCCCa -3'
miRNA:   3'- -GUGUCAGgGAUAauuCC---------------UUGUGGGGg -5'
2058 3' -50.6 NC_001348.1 + 98103 0.66 0.98531
Target:  5'- -cCAGUCUUUGUaGAGGAACugaCCCg -3'
miRNA:   3'- guGUCAGGGAUAaUUCCUUGuggGGG- -5'
2058 3' -50.6 NC_001348.1 + 60921 0.66 0.98531
Target:  5'- aAguGUCCCgg--AGGGcAACcauaACCCCCu -3'
miRNA:   3'- gUguCAGGGauaaUUCC-UUG----UGGGGG- -5'
2058 3' -50.6 NC_001348.1 + 109672 0.67 0.983412
Target:  5'- gCGCGGUacCCCgccgAUggggAGGGGGCGCgguaCCCCg -3'
miRNA:   3'- -GUGUCA--GGGa---UAa---UUCCUUGUG----GGGG- -5'
2058 3' -50.6 NC_001348.1 + 109726 0.67 0.983412
Target:  5'- gCGCGGUacCCCgccgAUggggAGGGGGCGCgguaCCCCg -3'
miRNA:   3'- -GUGUCA--GGGa---UAa---UUCCUUGUG----GGGG- -5'
2058 3' -50.6 NC_001348.1 + 120066 0.67 0.983412
Target:  5'- gCGCGGUacCCCgccgAUggggAGGGGGCGCgguaCCCCg -3'
miRNA:   3'- -GUGUCA--GGGa---UAa---UUCCUUGUG----GGGG- -5'
2058 3' -50.6 NC_001348.1 + 120120 0.67 0.983412
Target:  5'- gCGCGGUacCCCgccgAUggggAGGGGGCGCgguaCCCCg -3'
miRNA:   3'- -GUGUCA--GGGa---UAa---UUCCUUGUG----GGGG- -5'
2058 3' -50.6 NC_001348.1 + 121639 0.67 0.981335
Target:  5'- -cCAGaCCCgAUUGAGGAugACagCCCa -3'
miRNA:   3'- guGUCaGGGaUAAUUCCUugUGg-GGG- -5'
2058 3' -50.6 NC_001348.1 + 108153 0.67 0.981335
Target:  5'- -cCAGaCCCgAUUGAGGAugACagCCCa -3'
miRNA:   3'- guGUCaGGGaUAAUUCCUugUGg-GGG- -5'
2058 3' -50.6 NC_001348.1 + 73323 0.67 0.979068
Target:  5'- uGCGGUCCggg--AAGGucuACGuCCCCCg -3'
miRNA:   3'- gUGUCAGGgauaaUUCCu--UGU-GGGGG- -5'
2058 3' -50.6 NC_001348.1 + 23896 0.68 0.96794
Target:  5'- gUACGG-CCCaUGggAGGGAACAUUUCCa -3'
miRNA:   3'- -GUGUCaGGG-AUaaUUCCUUGUGGGGG- -5'
2058 3' -50.6 NC_001348.1 + 10010 0.69 0.948835
Target:  5'- uGCAGaaUCCCUAUguaAAGGuu-GCCCCUg -3'
miRNA:   3'- gUGUC--AGGGAUAa--UUCCuugUGGGGG- -5'
2058 3' -50.6 NC_001348.1 + 24087 1.1 0.006811
Target:  5'- gACAGUCCCUAUUAAGGAACACCCCCu -3'
miRNA:   3'- gUGUCAGGGAUAAUUCCUUGUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.