miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20584 3' -56.7 NC_004688.1 + 14085 0.66 0.857099
Target:  5'- cCGUCcaauCCCacgcguaCUCGCgGGCAgCGUCGa -3'
miRNA:   3'- -GCAGu---GGGaa-----GAGCGgCUGUgGCAGC- -5'
20584 3' -56.7 NC_004688.1 + 59183 0.66 0.849266
Target:  5'- -aUCGCggUUCagCGCCGACACCGgCGg -3'
miRNA:   3'- gcAGUGggAAGa-GCGGCUGUGGCaGC- -5'
20584 3' -56.7 NC_004688.1 + 35231 0.66 0.849266
Target:  5'- uGUCGuCCCaggggcUCUCGUCGGCAgCGcCGa -3'
miRNA:   3'- gCAGU-GGGa-----AGAGCGGCUGUgGCaGC- -5'
20584 3' -56.7 NC_004688.1 + 25512 0.66 0.841238
Target:  5'- uCGUCAUCCacCUCGUCGGCaaACCGa-- -3'
miRNA:   3'- -GCAGUGGGaaGAGCGGCUG--UGGCagc -5'
20584 3' -56.7 NC_004688.1 + 31554 0.67 0.816043
Target:  5'- aGUCGCCaggCUCGCCGGCGagaaCGa-- -3'
miRNA:   3'- gCAGUGGgaaGAGCGGCUGUg---GCagc -5'
20584 3' -56.7 NC_004688.1 + 2189 0.67 0.8073
Target:  5'- cCGUUGCCCgcaaUCaUGUCGGCGCgCGUCa -3'
miRNA:   3'- -GCAGUGGGa---AGaGCGGCUGUG-GCAGc -5'
20584 3' -56.7 NC_004688.1 + 78288 0.67 0.8073
Target:  5'- aCGcCGCCgCggaUCGCCGACACCaccguGUCa -3'
miRNA:   3'- -GCaGUGG-GaagAGCGGCUGUGG-----CAGc -5'
20584 3' -56.7 NC_004688.1 + 82587 0.68 0.742148
Target:  5'- cCGUCGCCgcaUUCcaugccgaaGCCGACGCCG-CGg -3'
miRNA:   3'- -GCAGUGGg--AAGag-------CGGCUGUGGCaGC- -5'
20584 3' -56.7 NC_004688.1 + 100567 0.68 0.742148
Target:  5'- cCGUUGCCCUUCUCGUaggucagGGCcUCGUUGa -3'
miRNA:   3'- -GCAGUGGGAAGAGCGg------CUGuGGCAGC- -5'
20584 3' -56.7 NC_004688.1 + 67446 0.68 0.742148
Target:  5'- cCGUCACCCUg------GACGCCGUCGa -3'
miRNA:   3'- -GCAGUGGGAagagcggCUGUGGCAGC- -5'
20584 3' -56.7 NC_004688.1 + 79890 0.68 0.732383
Target:  5'- uCGUCGCCCUUCU-GCC--CGCUGUgGa -3'
miRNA:   3'- -GCAGUGGGAAGAgCGGcuGUGGCAgC- -5'
20584 3' -56.7 NC_004688.1 + 75125 0.69 0.712602
Target:  5'- gCGUCACCCcgCUCGguaCCGuCACCGa-- -3'
miRNA:   3'- -GCAGUGGGaaGAGC---GGCuGUGGCagc -5'
20584 3' -56.7 NC_004688.1 + 92252 0.69 0.672292
Target:  5'- aCGUCcgcGCCCcgccagugaUCUCGUaggUGACGCCGUCGu -3'
miRNA:   3'- -GCAG---UGGGa--------AGAGCG---GCUGUGGCAGC- -5'
20584 3' -56.7 NC_004688.1 + 96852 0.7 0.631455
Target:  5'- --aCGCCCUUCUCGUCGGCGguuuCCaUCGc -3'
miRNA:   3'- gcaGUGGGAAGAGCGGCUGU----GGcAGC- -5'
20584 3' -56.7 NC_004688.1 + 92216 0.7 0.621227
Target:  5'- uCGUCACCUUgaaaggCUUGCCGGCGaaGuUCGg -3'
miRNA:   3'- -GCAGUGGGAa-----GAGCGGCUGUggC-AGC- -5'
20584 3' -56.7 NC_004688.1 + 52045 0.7 0.621227
Target:  5'- -aUCugCCUcgUCGCCGGCGCCGg-- -3'
miRNA:   3'- gcAGugGGAagAGCGGCUGUGGCagc -5'
20584 3' -56.7 NC_004688.1 + 84241 0.7 0.611007
Target:  5'- -cUCGCCCUUCUuuucUGCCGACuucUCGUCu -3'
miRNA:   3'- gcAGUGGGAAGA----GCGGCUGu--GGCAGc -5'
20584 3' -56.7 NC_004688.1 + 58892 0.71 0.600803
Target:  5'- cCGcUGCCCUUCUCGCUGcCGCCGcugcugCGg -3'
miRNA:   3'- -GCaGUGGGAAGAGCGGCuGUGGCa-----GC- -5'
20584 3' -56.7 NC_004688.1 + 23993 0.73 0.472559
Target:  5'- uCGUCACCCaag-UGCCGuCGCCGUUGc -3'
miRNA:   3'- -GCAGUGGGaagaGCGGCuGUGGCAGC- -5'
20584 3' -56.7 NC_004688.1 + 89957 0.74 0.40937
Target:  5'- aCGUCGgCCaUCUCGCCGGCgACCG-Ca -3'
miRNA:   3'- -GCAGUgGGaAGAGCGGCUG-UGGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.