miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20584 5' -54.2 NC_004688.1 + 36181 0.66 0.899104
Target:  5'- cGUCGGCGCCgaUGCCGauaucGGccAGGACAu -3'
miRNA:   3'- -UAGCUGCGG--AUGGCguu--CU--UCCUGUu -5'
20584 5' -54.2 NC_004688.1 + 84554 0.66 0.899104
Target:  5'- -cCGACGCCgagGCCGCcgcccuGGGGCu- -3'
miRNA:   3'- uaGCUGCGGa--UGGCGuucu--UCCUGuu -5'
20584 5' -54.2 NC_004688.1 + 61107 0.66 0.862064
Target:  5'- cUCGACaaCUACCagggucgauggcGCAAGAAGGACc- -3'
miRNA:   3'- uAGCUGcgGAUGG------------CGUUCUUCCUGuu -5'
20584 5' -54.2 NC_004688.1 + 8399 0.67 0.845594
Target:  5'- -cCGACGCCUauACCGCAu--GGGccGCGAa -3'
miRNA:   3'- uaGCUGCGGA--UGGCGUucuUCC--UGUU- -5'
20584 5' -54.2 NC_004688.1 + 97583 0.67 0.837032
Target:  5'- aGUCGACGCCUuggcGCUcaaGCAuuucgaccGGGAGGACc- -3'
miRNA:   3'- -UAGCUGCGGA----UGG---CGU--------UCUUCCUGuu -5'
20584 5' -54.2 NC_004688.1 + 70988 0.67 0.828264
Target:  5'- aGUCGGCGCCUGcuCCGCcGGGuccGGugGc -3'
miRNA:   3'- -UAGCUGCGGAU--GGCGuUCUu--CCugUu -5'
20584 5' -54.2 NC_004688.1 + 95734 0.67 0.819297
Target:  5'- -cCGGgGCCUGCCuCAAGGcccaAGGGCAu -3'
miRNA:   3'- uaGCUgCGGAUGGcGUUCU----UCCUGUu -5'
20584 5' -54.2 NC_004688.1 + 35509 0.67 0.819297
Target:  5'- -gCGGCGCCg---GCGAGAAGGAUg- -3'
miRNA:   3'- uaGCUGCGGauggCGUUCUUCCUGuu -5'
20584 5' -54.2 NC_004688.1 + 95767 0.68 0.78164
Target:  5'- -cCGACGUCUACUauGCAGcGAAGGAgCAAu -3'
miRNA:   3'- uaGCUGCGGAUGG--CGUU-CUUCCU-GUU- -5'
20584 5' -54.2 NC_004688.1 + 1042 0.69 0.710425
Target:  5'- uGUUGACGCUUGCCGCGccAGcucuagcGGACGAc -3'
miRNA:   3'- -UAGCUGCGGAUGGCGU--UCuu-----CCUGUU- -5'
20584 5' -54.2 NC_004688.1 + 66321 0.73 0.5084
Target:  5'- -gCGGCGCCUucgggccCUGCAccaGGAAGGACAAg -3'
miRNA:   3'- uaGCUGCGGAu------GGCGU---UCUUCCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.