miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 20886 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 109136 0.68 0.765083
Target:  5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3'
miRNA:   3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 119719 0.67 0.792757
Target:  5'- aCCCC-CCCCCuuuuucACCCcccc-ACCCCa -3'
miRNA:   3'- -GGGGcGGGGGu-----UGGGuuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 119990 0.67 0.796355
Target:  5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 109802 0.67 0.796355
Target:  5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 121531 0.67 0.801707
Target:  5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3'
miRNA:   3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5'
2059 3' -57 NC_001348.1 + 108261 0.67 0.801707
Target:  5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3'
miRNA:   3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5'
2059 3' -57 NC_001348.1 + 206 0.67 0.807882
Target:  5'- aCCCCGCCggucaCCCucacgucguccCCCAGcauggaugacguuGcgACCCCCa -3'
miRNA:   3'- -GGGGCGG-----GGGuu---------GGGUU-------------UuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 54319 0.67 0.810506
Target:  5'- -aCUGUCCCUGGuCUUAAAcgACCCCCc -3'
miRNA:   3'- ggGGCGGGGGUU-GGGUUUuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 92215 0.67 0.810506
Target:  5'- --aCaCCCUCGACCCGGAGUACCgguUCCa -3'
miRNA:   3'- gggGcGGGGGUUGGGUUUUAUGG---GGG- -5'
2059 3' -57 NC_001348.1 + 74257 0.67 0.819144
Target:  5'- --gCGCCCCCGAUgCGGGA-GCCgCCa -3'
miRNA:   3'- gggGCGGGGGUUGgGUUUUaUGGgGG- -5'
2059 3' -57 NC_001348.1 + 9296 0.67 0.827614
Target:  5'- gCCCGUguugaCCCCAaaacagACgCAAGAUguacaacgcacaACCCCCg -3'
miRNA:   3'- gGGGCG-----GGGGU------UGgGUUUUA------------UGGGGG- -5'
2059 3' -57 NC_001348.1 + 117238 0.67 0.827614
Target:  5'- aCCgGCgaCUacuaAACCCAAGGaaauUACCCCCg -3'
miRNA:   3'- gGGgCGg-GGg---UUGGGUUUU----AUGGGGG- -5'
2059 3' -57 NC_001348.1 + 68584 0.66 0.839175
Target:  5'- aCCCCacuaccgccagaaacGCCCCU--CCUAAAGagGCCCCa -3'
miRNA:   3'- -GGGG---------------CGGGGGuuGGGUUUUa-UGGGGg -5'
2059 3' -57 NC_001348.1 + 105090 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 124702 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 70093 0.66 0.841606
Target:  5'- aUCUCGCCUCCAugUuugCGGGGUAuggaaauuaagcauCCCCCg -3'
miRNA:   3'- -GGGGCGGGGGUugG---GUUUUAU--------------GGGGG- -5'
2059 3' -57 NC_001348.1 + 2531 0.66 0.851941
Target:  5'- aUCCCGCccauauauCCCCAacgucGCCUuAAAaACUCCCa -3'
miRNA:   3'- -GGGGCG--------GGGGU-----UGGGuUUUaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 114986 0.66 0.851941
Target:  5'- aCCCGCgacaCCCAAagggUCCG--GUACCUCCc -3'
miRNA:   3'- gGGGCGg---GGGUU----GGGUuuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 123041 0.66 0.851941
Target:  5'- ---gGCCCCCcggggaauACgCCGAAAU-CCCCCg -3'
miRNA:   3'- ggggCGGGGGu-------UG-GGUUUUAuGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.