miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 110313 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 102443 0.69 0.686811
Target:  5'- cCCCCGCaaguuugcuuuaCCCUcGCCUucaccACCCCCg -3'
miRNA:   3'- -GGGGCG------------GGGGuUGGGuuuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 72497 0.69 0.677742
Target:  5'- gCCCGCCaucuccuugauauaaCCGACCCuaacacguuAAAcauaccgucuAUACCCCCa -3'
miRNA:   3'- gGGGCGGg--------------GGUUGGG---------UUU----------UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 121974 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 38002 0.69 0.676732
Target:  5'- uUUCGCCa-CAAUCCAu-AUACCCCCg -3'
miRNA:   3'- gGGGCGGggGUUGGGUuuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 74082 0.7 0.666616
Target:  5'- gCCCCaacuaCCCCagaaGAUCCAAGAcACCCUCu -3'
miRNA:   3'- -GGGGc----GGGGg---UUGGGUUUUaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 84613 0.7 0.646311
Target:  5'- aUaaGCCCCCAGCCagccaaaAAAAUugCCCg -3'
miRNA:   3'- gGggCGGGGGUUGGg------UUUUAugGGGg -5'
2059 3' -57 NC_001348.1 + 124701 0.7 0.646311
Target:  5'- aCCCC-CCCCCGaaaauaACCCc-----CCCCCg -3'
miRNA:   3'- -GGGGcGGGGGU------UGGGuuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 122030 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 105389 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 92215 0.67 0.810506
Target:  5'- --aCaCCCUCGACCCGGAGUACCgguUCCa -3'
miRNA:   3'- gggGcGGGGGUUGGGUUUUAUGG---GGG- -5'
2059 3' -57 NC_001348.1 + 108261 0.67 0.801707
Target:  5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3'
miRNA:   3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5'
2059 3' -57 NC_001348.1 + 109802 0.67 0.796355
Target:  5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 20886 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 68584 0.66 0.839175
Target:  5'- aCCCCacuaccgccagaaacGCCCCU--CCUAAAGagGCCCCa -3'
miRNA:   3'- -GGGG---------------CGGGGGuuGGGUUUUa-UGGGGg -5'
2059 3' -57 NC_001348.1 + 124702 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 123041 0.66 0.851941
Target:  5'- ---gGCCCCCcggggaauACgCCGAAAU-CCCCCg -3'
miRNA:   3'- ggggCGGGGGu-------UG-GGUUUUAuGGGGG- -5'
2059 3' -57 NC_001348.1 + 120946 0.66 0.859665
Target:  5'- uUCCCGUCCCa---CCAug--ACCCCg -3'
miRNA:   3'- -GGGGCGGGGguugGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 111246 0.66 0.859665
Target:  5'- uCCCCGUCUCgauaaCAAUCgCcGGGUACCCCg -3'
miRNA:   3'- -GGGGCGGGG-----GUUGG-GuUUUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 42611 1.13 0.001183
Target:  5'- aCCCCGCCCCCAACCCAAAAUACCCCCc -3'
miRNA:   3'- -GGGGCGGGGGUUGGGUUUUAUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.