miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 92492 0.66 0.867186
Target:  5'- gUUCGUaaUCCCAACCCAcauggACCUCCu -3'
miRNA:   3'- gGGGCG--GGGGUUGGGUuuua-UGGGGG- -5'
2059 3' -57 NC_001348.1 + 108331 0.66 0.867186
Target:  5'- aCUCCGuCCCCCGAUgCAugcgcaugACCCgCu -3'
miRNA:   3'- -GGGGC-GGGGGUUGgGUuuua----UGGGgG- -5'
2059 3' -57 NC_001348.1 + 97741 0.76 0.341079
Target:  5'- aCCaaaGCCCCCGAgUCCAAAGUaacgGCCUCCa -3'
miRNA:   3'- gGGg--CGGGGGUU-GGGUUUUA----UGGGGG- -5'
2059 3' -57 NC_001348.1 + 124141 0.74 0.397267
Target:  5'- gCCCUcCCCCCGAuuCCCAGAGUaaugugGCCgCCCg -3'
miRNA:   3'- -GGGGcGGGGGUU--GGGUUUUA------UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 109136 0.68 0.765083
Target:  5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3'
miRNA:   3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 111133 0.75 0.356531
Target:  5'- aCCCCGUCCCCAAagagacCCCAGcGUGCCaUCg -3'
miRNA:   3'- -GGGGCGGGGGUU------GGGUUuUAUGGgGG- -5'
2059 3' -57 NC_001348.1 + 122595 0.69 0.710802
Target:  5'- aCCCCggccacacagGCUCCCGACCCucagccgucgGCCgCCg -3'
miRNA:   3'- -GGGG----------CGGGGGUUGGGuuuua-----UGGgGG- -5'
2059 3' -57 NC_001348.1 + 109 0.66 0.867186
Target:  5'- cCCCCcCCCgCCAGCCUuuAAcaaaACCCgCg -3'
miRNA:   3'- -GGGGcGGG-GGUUGGGuuUUa---UGGGgG- -5'
2059 3' -57 NC_001348.1 + 118546 0.66 0.859665
Target:  5'- uCCCCGUCUCgauaaCAAUCgCcGGGUACCCCg -3'
miRNA:   3'- -GGGGCGGGG-----GUUGG-GuUUUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 114312 0.69 0.716745
Target:  5'- uCCCCuCCCCCGGCUCAcaGAGcUGCUCUUc -3'
miRNA:   3'- -GGGGcGGGGGUUGGGU--UUU-AUGGGGG- -5'
2059 3' -57 NC_001348.1 + 103506 0.68 0.726591
Target:  5'- aUCCCGCCUCaucacGCCCGuAAAUACCUa- -3'
miRNA:   3'- -GGGGCGGGGgu---UGGGU-UUUAUGGGgg -5'
2059 3' -57 NC_001348.1 + 105787 0.68 0.736358
Target:  5'- --gCGCCCCgAGCCCcag--ACCCCg -3'
miRNA:   3'- gggGCGGGGgUUGGGuuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 103744 0.68 0.746034
Target:  5'- gUCCUGcCCCCCggUCCGGGGUugCUg- -3'
miRNA:   3'- -GGGGC-GGGGGuuGGGUUUUAugGGgg -5'
2059 3' -57 NC_001348.1 + 121111 0.68 0.755613
Target:  5'- cCUCCGUUCCCGcagGCCUucuccccuGUAUCCCCc -3'
miRNA:   3'- -GGGGCGGGGGU---UGGGuuu-----UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 110313 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 60904 0.69 0.686811
Target:  5'- aCCCGuacgguCCCCCGAaguguCCCGGAGggcaaccauaACCCCCu -3'
miRNA:   3'- gGGGC------GGGGGUU-----GGGUUUUa---------UGGGGG- -5'
2059 3' -57 NC_001348.1 + 122030 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 105389 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 69922 0.71 0.555263
Target:  5'- uCCaCCGCCCCCGAuCCCGcugcAAGUaagGCCaCUCg -3'
miRNA:   3'- -GG-GGCGGGGGUU-GGGU----UUUA---UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 123757 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.