miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 5' -51.8 NC_001348.1 + 123912 0.66 0.968542
Target:  5'- aGGGGGACgcGGGUCUUGgggcccgccgggUACACACGGu -3'
miRNA:   3'- aUUCCCUG--UCUGGAACa-----------GUGUGUGCC- -5'
2059 5' -51.8 NC_001348.1 + 72121 0.67 0.962487
Target:  5'- cGAGGGACAucuaaaucGugUUg--CACGCGCGGc -3'
miRNA:   3'- aUUCCCUGU--------CugGAacaGUGUGUGCC- -5'
2059 5' -51.8 NC_001348.1 + 105879 0.67 0.950677
Target:  5'- aGGGGGACgcGGGUCUUGgggCcCGCGCGGg -3'
miRNA:   3'- aUUCCCUG--UCUGGAACa--GuGUGUGCC- -5'
2059 5' -51.8 NC_001348.1 + 42174 0.67 0.950677
Target:  5'- cGAGGGACc-GCCUUGggagCACugGCa- -3'
miRNA:   3'- aUUCCCUGucUGGAACa---GUGugUGcc -5'
2059 5' -51.8 NC_001348.1 + 42476 0.68 0.943462
Target:  5'- -uGGGGGCGGgguagacuguggcacGCCUUGggcCGCGgGCGGu -3'
miRNA:   3'- auUCCCUGUC---------------UGGAACa--GUGUgUGCC- -5'
2059 5' -51.8 NC_001348.1 + 47272 0.68 0.936612
Target:  5'- -cAGGcGGCAGGCUUUGUUuguAUACACGc -3'
miRNA:   3'- auUCC-CUGUCUGGAACAG---UGUGUGCc -5'
2059 5' -51.8 NC_001348.1 + 10911 0.69 0.904131
Target:  5'- aAAGGGGCAGGCgUguauaagagggccccUGUUuaAUACGCGGu -3'
miRNA:   3'- aUUCCCUGUCUGgA---------------ACAG--UGUGUGCC- -5'
2059 5' -51.8 NC_001348.1 + 112632 0.7 0.865301
Target:  5'- gGAGGGugAGGCCgUGgccUUACugAUGGa -3'
miRNA:   3'- aUUCCCugUCUGGaAC---AGUGugUGCC- -5'
2059 5' -51.8 NC_001348.1 + 42577 1.1 0.004785
Target:  5'- gUAAGGGACAGACCUUGUCACACACGGg -3'
miRNA:   3'- -AUUCCCUGUCUGGAACAGUGUGUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.