miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20591 3' -56 NC_004688.1 + 27052 0.66 0.848857
Target:  5'- cGUGCAGgcguaguuGCUGUUGGCG-GGCgGAuCGa -3'
miRNA:   3'- cUACGUC--------UGGCAACCGUaCCGgCU-GC- -5'
20591 3' -56 NC_004688.1 + 86004 0.66 0.832164
Target:  5'- --aGCGGAgCCG-UGGCGagguuGCCGACGa -3'
miRNA:   3'- cuaCGUCU-GGCaACCGUac---CGGCUGC- -5'
20591 3' -56 NC_004688.1 + 87112 0.66 0.831308
Target:  5'- cGAUGCcgagaccAGACCaUUGGCcaGGCCGaACGc -3'
miRNA:   3'- -CUACG-------UCUGGcAACCGuaCCGGC-UGC- -5'
20591 3' -56 NC_004688.1 + 86957 0.67 0.805712
Target:  5'- -uUGCcgAGuCCGccGGCGaGGCCGGCGa -3'
miRNA:   3'- cuACG--UCuGGCaaCCGUaCCGGCUGC- -5'
20591 3' -56 NC_004688.1 + 49288 0.67 0.796552
Target:  5'- uGAUGUcgaGGAuuUCGUUGGCGaGGCUGAUa -3'
miRNA:   3'- -CUACG---UCU--GGCAACCGUaCCGGCUGc -5'
20591 3' -56 NC_004688.1 + 55475 0.67 0.787236
Target:  5'- --aGCGGagcaucgccGCCGggcucGGC-UGGCCGACGa -3'
miRNA:   3'- cuaCGUC---------UGGCaa---CCGuACCGGCUGC- -5'
20591 3' -56 NC_004688.1 + 99710 0.67 0.787236
Target:  5'- --gGCAGGCCGU--GCAucUGGCCcACGa -3'
miRNA:   3'- cuaCGUCUGGCAacCGU--ACCGGcUGC- -5'
20591 3' -56 NC_004688.1 + 80629 0.67 0.777774
Target:  5'- --gGCacaaAGACCuc-GGCGUGGCCGuACGg -3'
miRNA:   3'- cuaCG----UCUGGcaaCCGUACCGGC-UGC- -5'
20591 3' -56 NC_004688.1 + 103200 0.67 0.777774
Target:  5'- gGAUGCAGuCCGgguggaucGGCAUGaucGCCGuCGg -3'
miRNA:   3'- -CUACGUCuGGCaa------CCGUAC---CGGCuGC- -5'
20591 3' -56 NC_004688.1 + 5567 0.67 0.777774
Target:  5'- -uUGCAgGACUac-GGCGUGGCUGugGu -3'
miRNA:   3'- cuACGU-CUGGcaaCCGUACCGGCugC- -5'
20591 3' -56 NC_004688.1 + 8890 0.67 0.768174
Target:  5'- aGAUGaGGACgUGggUGGCAUGagaGCCGACGa -3'
miRNA:   3'- -CUACgUCUG-GCa-ACCGUAC---CGGCUGC- -5'
20591 3' -56 NC_004688.1 + 79814 0.69 0.697969
Target:  5'- gGGUGUAG-CCGUUGGUgcccccgccGaGGCUGGCGa -3'
miRNA:   3'- -CUACGUCuGGCAACCG---------UaCCGGCUGC- -5'
20591 3' -56 NC_004688.1 + 87949 0.69 0.687629
Target:  5'- --gGCAGAUCGgUGaGCAUGuuGCCGAUGa -3'
miRNA:   3'- cuaCGUCUGGCaAC-CGUAC--CGGCUGC- -5'
20591 3' -56 NC_004688.1 + 60955 0.69 0.687629
Target:  5'- --cGCAcGACUGUUGGCAcggGGCCuauaGCGg -3'
miRNA:   3'- cuaCGU-CUGGCAACCGUa--CCGGc---UGC- -5'
20591 3' -56 NC_004688.1 + 166 0.69 0.656356
Target:  5'- -cUGCGGGCgCGcgUGGCAUGGCgauugCGACc -3'
miRNA:   3'- cuACGUCUG-GCa-ACCGUACCG-----GCUGc -5'
20591 3' -56 NC_004688.1 + 12071 0.7 0.614413
Target:  5'- gGggGCGGGCCaGcgGGC-UGGCUGACGc -3'
miRNA:   3'- -CuaCGUCUGG-CaaCCGuACCGGCUGC- -5'
20591 3' -56 NC_004688.1 + 101815 0.7 0.603942
Target:  5'- --cGCAGGCCGacgcuggUGGUcgGGuuGGCGc -3'
miRNA:   3'- cuaCGUCUGGCa------ACCGuaCCggCUGC- -5'
20591 3' -56 NC_004688.1 + 20974 0.73 0.46944
Target:  5'- gGGUGCGGcggcucGCCGccUGGCcgggguccgcuuccGUGGCCGACGg -3'
miRNA:   3'- -CUACGUC------UGGCa-ACCG--------------UACCGGCUGC- -5'
20591 3' -56 NC_004688.1 + 8468 0.73 0.453283
Target:  5'- --cGCccgaccuGACCGUUGaGCAggugUGGCCGGCGg -3'
miRNA:   3'- cuaCGu------CUGGCAAC-CGU----ACCGGCUGC- -5'
20591 3' -56 NC_004688.1 + 93198 0.75 0.356755
Target:  5'- --cGCGGGCCGcUUGGCG-GGCCGAa- -3'
miRNA:   3'- cuaCGUCUGGC-AACCGUaCCGGCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.