miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20596 3' -58.5 NC_004688.1 + 43130 0.66 0.754678
Target:  5'- aUCUUCGCCA----UGGCGUagGCCGCg -3'
miRNA:   3'- cGGAAGCGGUuggaGCCGCAg-CGGUG- -5'
20596 3' -58.5 NC_004688.1 + 92514 0.66 0.754678
Target:  5'- cGUCUggcCGCCgAACUUCacGCGaUCGCCACc -3'
miRNA:   3'- -CGGAa--GCGG-UUGGAGc-CGC-AGCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 103164 0.66 0.754678
Target:  5'- uCCagUCGCCGuccucauCCUUGGCGUCgGUgACg -3'
miRNA:   3'- cGGa-AGCGGUu------GGAGCCGCAG-CGgUG- -5'
20596 3' -58.5 NC_004688.1 + 110430 0.66 0.745013
Target:  5'- cGCUcUCGCuCGcgcGCCUUacggcaGGCGUCGCC-Cg -3'
miRNA:   3'- -CGGaAGCG-GU---UGGAG------CCGCAGCGGuG- -5'
20596 3' -58.5 NC_004688.1 + 42207 0.66 0.745013
Target:  5'- gGCCgccCGCUgcuGCCUCuGCGUCuauccgauaGCCGCg -3'
miRNA:   3'- -CGGaa-GCGGu--UGGAGcCGCAG---------CGGUG- -5'
20596 3' -58.5 NC_004688.1 + 100761 0.66 0.735249
Target:  5'- gGCCgacagCGCggcgcgcucuuCAGCCUUGGCGcCGUgGCg -3'
miRNA:   3'- -CGGaa---GCG-----------GUUGGAGCCGCaGCGgUG- -5'
20596 3' -58.5 NC_004688.1 + 39826 0.66 0.735249
Target:  5'- gGCUUgCGCCAGCgCUUGGgGgugagCGCgCGCa -3'
miRNA:   3'- -CGGAaGCGGUUG-GAGCCgCa----GCG-GUG- -5'
20596 3' -58.5 NC_004688.1 + 75878 0.66 0.732301
Target:  5'- cGCCUcCGCgAACUUCGuGUagucguugauguucGUCGCCAg -3'
miRNA:   3'- -CGGAaGCGgUUGGAGC-CG--------------CAGCGGUg -5'
20596 3' -58.5 NC_004688.1 + 78679 0.66 0.715459
Target:  5'- gGCCUUCGCCcACCgCGaaGaaaUCGCCAa -3'
miRNA:   3'- -CGGAAGCGGuUGGaGCcgC---AGCGGUg -5'
20596 3' -58.5 NC_004688.1 + 20397 0.66 0.715459
Target:  5'- aCCUUCGUCAAUCcagUCGGCuacaGCCAUc -3'
miRNA:   3'- cGGAAGCGGUUGG---AGCCGcag-CGGUG- -5'
20596 3' -58.5 NC_004688.1 + 69276 0.67 0.705452
Target:  5'- cGCCaguUUCGCCGcuGCgUUGGCGgggaUGUCACg -3'
miRNA:   3'- -CGG---AAGCGGU--UGgAGCCGCa---GCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 77544 0.67 0.695383
Target:  5'- cGCCUUCGCaauCGACgaCGGCGg-GCUAUc -3'
miRNA:   3'- -CGGAAGCG---GUUGgaGCCGCagCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 37798 0.67 0.695383
Target:  5'- uGCCccCGCCAcacccCCUCgucccuGGCG-CGCCGCa -3'
miRNA:   3'- -CGGaaGCGGUu----GGAG------CCGCaGCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 82025 0.67 0.685261
Target:  5'- uCCUUacuccgGCCAgcGCCUCaugGGCGUCaguGCCGCg -3'
miRNA:   3'- cGGAAg-----CGGU--UGGAG---CCGCAG---CGGUG- -5'
20596 3' -58.5 NC_004688.1 + 100504 0.67 0.685261
Target:  5'- uCCUUgGCCGGCUcgUCGGCcaUGCCAa -3'
miRNA:   3'- cGGAAgCGGUUGG--AGCCGcaGCGGUg -5'
20596 3' -58.5 NC_004688.1 + 25589 0.67 0.685261
Target:  5'- gGCCUccCG-CAGCCUgaUGGCGgccagCGCCGCc -3'
miRNA:   3'- -CGGAa-GCgGUUGGA--GCCGCa----GCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 6500 0.67 0.685261
Target:  5'- uGCUUUCGCgGACCUgGGCGaacCGUUggACg -3'
miRNA:   3'- -CGGAAGCGgUUGGAgCCGCa--GCGG--UG- -5'
20596 3' -58.5 NC_004688.1 + 85171 0.67 0.675095
Target:  5'- cCCgaUUCGCCGA---UGGCGUaCGCCACg -3'
miRNA:   3'- cGG--AAGCGGUUggaGCCGCA-GCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 87977 0.67 0.654665
Target:  5'- cGCCcaggUCGCC-GCCgCGGCGccuaccccuacCGCCGCg -3'
miRNA:   3'- -CGGa---AGCGGuUGGaGCCGCa----------GCGGUG- -5'
20596 3' -58.5 NC_004688.1 + 35513 0.68 0.640317
Target:  5'- cGCCggcgagaaggaugUUGCCGAUCgccaGGuCGUCGCCAUc -3'
miRNA:   3'- -CGGa------------AGCGGUUGGag--CC-GCAGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.