miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20598 5' -55.9 NC_004688.1 + 46887 0.66 0.874761
Target:  5'- -uCGGCAUCcaGCgCUC-GGUUgCACCCg -3'
miRNA:   3'- uuGCUGUAG--UGgGAGcCCAAgGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 71819 0.66 0.874761
Target:  5'- -cCGcACcugCACCgCUCGGGUuaucUCCGCCa -3'
miRNA:   3'- uuGC-UGua-GUGG-GAGCCCA----AGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 53657 0.66 0.874761
Target:  5'- ---cGCAUCACCCgggCGGGgccagUCCuuAUCCu -3'
miRNA:   3'- uugcUGUAGUGGGa--GCCCa----AGG--UGGG- -5'
20598 5' -55.9 NC_004688.1 + 93902 0.66 0.867271
Target:  5'- cGAUGACGUCgGCCUguUCGGGg-CCGCUg -3'
miRNA:   3'- -UUGCUGUAG-UGGG--AGCCCaaGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 23553 0.66 0.867271
Target:  5'- cACGGCcguUCAUCCUCcGGUaucggUUCGCCCc -3'
miRNA:   3'- uUGCUGu--AGUGGGAGcCCA-----AGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 46925 0.66 0.859561
Target:  5'- cACGAUcgCGCCCccacacuggcCGGGgaCCGCCUc -3'
miRNA:   3'- uUGCUGuaGUGGGa---------GCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 86617 0.66 0.851637
Target:  5'- uGCGGCc-CGCgUUCGGGUUCCAgCg -3'
miRNA:   3'- uUGCUGuaGUGgGAGCCCAAGGUgGg -5'
20598 5' -55.9 NC_004688.1 + 107085 0.66 0.851637
Target:  5'- cACGGCAUgGCCa--GGGUUUCugcgACCCu -3'
miRNA:   3'- uUGCUGUAgUGGgagCCCAAGG----UGGG- -5'
20598 5' -55.9 NC_004688.1 + 94204 0.66 0.843507
Target:  5'- cGCGGCGg-GCCaaCGGGUUCUcgACCCc -3'
miRNA:   3'- uUGCUGUagUGGgaGCCCAAGG--UGGG- -5'
20598 5' -55.9 NC_004688.1 + 93173 0.66 0.835178
Target:  5'- cAACGGCG-CGCuCCaCGGGUUCCGgCg -3'
miRNA:   3'- -UUGCUGUaGUG-GGaGCCCAAGGUgGg -5'
20598 5' -55.9 NC_004688.1 + 81155 0.67 0.826656
Target:  5'- cAGCGGguCGUUGCCCggcUGGGgaUCACCCg -3'
miRNA:   3'- -UUGCU--GUAGUGGGa--GCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 98963 0.67 0.817951
Target:  5'- -uCGGCAgccggugguacUCAUCCUCGGuGUUgugauccucgacCCACCCc -3'
miRNA:   3'- uuGCUGU-----------AGUGGGAGCC-CAA------------GGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 80977 0.67 0.817951
Target:  5'- gGGCGuAC-UCACCCuUCGGGUUCaagaauggCGCCa -3'
miRNA:   3'- -UUGC-UGuAGUGGG-AGCCCAAG--------GUGGg -5'
20598 5' -55.9 NC_004688.1 + 102473 0.67 0.777682
Target:  5'- -gUGaAUAUCGCCCUCGGGgauugguggcgcgUCUuCCCa -3'
miRNA:   3'- uuGC-UGUAGUGGGAGCCCa------------AGGuGGG- -5'
20598 5' -55.9 NC_004688.1 + 12732 0.68 0.752605
Target:  5'- aAGCGACG-CGCCCccucuuUCGGGcgggcgUCgCACCCc -3'
miRNA:   3'- -UUGCUGUaGUGGG------AGCCCa-----AG-GUGGG- -5'
20598 5' -55.9 NC_004688.1 + 104878 0.68 0.752605
Target:  5'- ---aACAUCACCCUcgcgccCGGGUUggGCCCg -3'
miRNA:   3'- uugcUGUAGUGGGA------GCCCAAggUGGG- -5'
20598 5' -55.9 NC_004688.1 + 99019 0.68 0.752605
Target:  5'- uAGCGACAg-AUCUUCGGGggcCCGCCa -3'
miRNA:   3'- -UUGCUGUagUGGGAGCCCaa-GGUGGg -5'
20598 5' -55.9 NC_004688.1 + 57186 0.68 0.751625
Target:  5'- cGACGACGgagaacguuuccuUCuggGCCUgCGGG-UCCGCCCa -3'
miRNA:   3'- -UUGCUGU-------------AG---UGGGaGCCCaAGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 85109 0.68 0.741761
Target:  5'- cGACGACcucguUCGCCCcgccggggccgccUUGGGggCCGCCg -3'
miRNA:   3'- -UUGCUGu----AGUGGG-------------AGCCCaaGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 105966 0.69 0.702434
Target:  5'- -uCGACcaaAUCGCCCaUGGuGgUCCACCCg -3'
miRNA:   3'- uuGCUG---UAGUGGGaGCC-CaAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.