miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20598 5' -55.9 NC_004688.1 + 94289 0.72 0.536987
Target:  5'- cGCGACAccCAUCUUCGGG--CCGCCCc -3'
miRNA:   3'- uUGCUGUa-GUGGGAGCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 18299 0.71 0.57789
Target:  5'- uACGGCAUC-CUC-CGGGaUUCCGCCg -3'
miRNA:   3'- uUGCUGUAGuGGGaGCCC-AAGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 18911 0.71 0.57789
Target:  5'- -uCGAagAUCAUCuCUCGGGacaUCCACCCg -3'
miRNA:   3'- uuGCUg-UAGUGG-GAGCCCa--AGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 101139 0.71 0.57789
Target:  5'- cGGCGACggucaguucGUCGgCCUCGGGgucgaCGCCCa -3'
miRNA:   3'- -UUGCUG---------UAGUgGGAGCCCaag--GUGGG- -5'
20598 5' -55.9 NC_004688.1 + 93094 0.71 0.588234
Target:  5'- --aGcCAUCACUCaccuuUCGGGggCCGCCCg -3'
miRNA:   3'- uugCuGUAGUGGG-----AGCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 83289 0.7 0.640294
Target:  5'- uGACGACAguguucugcucgUCGCCCgaCGGGgUCCagcggGCCCg -3'
miRNA:   3'- -UUGCUGU------------AGUGGGa-GCCCaAGG-----UGGG- -5'
20598 5' -55.9 NC_004688.1 + 85520 0.69 0.681867
Target:  5'- cGugGACGUgAUCCUCGuGGUUCUGCg- -3'
miRNA:   3'- -UugCUGUAgUGGGAGC-CCAAGGUGgg -5'
20598 5' -55.9 NC_004688.1 + 80072 0.69 0.687027
Target:  5'- gAACGGCAgcucgccgaagcCGCCCUCGGGcgUcagaacaagauaggCCACCCc -3'
miRNA:   3'- -UUGCUGUa-----------GUGGGAGCCCa-A--------------GGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 108445 0.69 0.692176
Target:  5'- cGCGGCAUCACa---GGGcgCCACUCg -3'
miRNA:   3'- uUGCUGUAGUGggagCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 105966 0.69 0.702434
Target:  5'- -uCGACcaaAUCGCCCaUGGuGgUCCACCCg -3'
miRNA:   3'- uuGCUG---UAGUGGGaGCC-CaAGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 77515 0.69 0.702434
Target:  5'- cACGGCAcaUCGCCCgagCGGGU--CACCg -3'
miRNA:   3'- uUGCUGU--AGUGGGa--GCCCAagGUGGg -5'
20598 5' -55.9 NC_004688.1 + 18816 0.69 0.702434
Target:  5'- gGGCGAUGagAUCCgcgcCGGGggCCGCCCc -3'
miRNA:   3'- -UUGCUGUagUGGGa---GCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 85109 0.68 0.741761
Target:  5'- cGACGACcucguUCGCCCcgccggggccgccUUGGGggCCGCCg -3'
miRNA:   3'- -UUGCUGu----AGUGGG-------------AGCCCaaGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 57186 0.68 0.751625
Target:  5'- cGACGACGgagaacguuuccuUCuggGCCUgCGGG-UCCGCCCa -3'
miRNA:   3'- -UUGCUGU-------------AG---UGGGaGCCCaAGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 12732 0.68 0.752605
Target:  5'- aAGCGACG-CGCCCccucuuUCGGGcgggcgUCgCACCCc -3'
miRNA:   3'- -UUGCUGUaGUGGG------AGCCCa-----AG-GUGGG- -5'
20598 5' -55.9 NC_004688.1 + 99019 0.68 0.752605
Target:  5'- uAGCGACAg-AUCUUCGGGggcCCGCCa -3'
miRNA:   3'- -UUGCUGUagUGGGAGCCCaa-GGUGGg -5'
20598 5' -55.9 NC_004688.1 + 104878 0.68 0.752605
Target:  5'- ---aACAUCACCCUcgcgccCGGGUUggGCCCg -3'
miRNA:   3'- uugcUGUAGUGGGA------GCCCAAggUGGG- -5'
20598 5' -55.9 NC_004688.1 + 102473 0.67 0.777682
Target:  5'- -gUGaAUAUCGCCCUCGGGgauugguggcgcgUCUuCCCa -3'
miRNA:   3'- uuGC-UGUAGUGGGAGCCCa------------AGGuGGG- -5'
20598 5' -55.9 NC_004688.1 + 80977 0.67 0.817951
Target:  5'- gGGCGuAC-UCACCCuUCGGGUUCaagaauggCGCCa -3'
miRNA:   3'- -UUGC-UGuAGUGGG-AGCCCAAG--------GUGGg -5'
20598 5' -55.9 NC_004688.1 + 98963 0.67 0.817951
Target:  5'- -uCGGCAgccggugguacUCAUCCUCGGuGUUgugauccucgacCCACCCc -3'
miRNA:   3'- uuGCUGU-----------AGUGGGAGCC-CAA------------GGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.