Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20598 | 5' | -55.9 | NC_004688.1 | + | 77515 | 0.69 | 0.702434 |
Target: 5'- cACGGCAcaUCGCCCgagCGGGU--CACCg -3' miRNA: 3'- uUGCUGU--AGUGGGa--GCCCAagGUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 18816 | 0.69 | 0.702434 |
Target: 5'- gGGCGAUGagAUCCgcgcCGGGggCCGCCCc -3' miRNA: 3'- -UUGCUGUagUGGGa---GCCCaaGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 108445 | 0.69 | 0.692176 |
Target: 5'- cGCGGCAUCACa---GGGcgCCACUCg -3' miRNA: 3'- uUGCUGUAGUGggagCCCaaGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 80072 | 0.69 | 0.687027 |
Target: 5'- gAACGGCAgcucgccgaagcCGCCCUCGGGcgUcagaacaagauaggCCACCCc -3' miRNA: 3'- -UUGCUGUa-----------GUGGGAGCCCa-A--------------GGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 85520 | 0.69 | 0.681867 |
Target: 5'- cGugGACGUgAUCCUCGuGGUUCUGCg- -3' miRNA: 3'- -UugCUGUAgUGGGAGC-CCAAGGUGgg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 83289 | 0.7 | 0.640294 |
Target: 5'- uGACGACAguguucugcucgUCGCCCgaCGGGgUCCagcggGCCCg -3' miRNA: 3'- -UUGCUGU------------AGUGGGa-GCCCaAGG-----UGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 93094 | 0.71 | 0.588234 |
Target: 5'- --aGcCAUCACUCaccuuUCGGGggCCGCCCg -3' miRNA: 3'- uugCuGUAGUGGG-----AGCCCaaGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 101139 | 0.71 | 0.57789 |
Target: 5'- cGGCGACggucaguucGUCGgCCUCGGGgucgaCGCCCa -3' miRNA: 3'- -UUGCUG---------UAGUgGGAGCCCaag--GUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 18911 | 0.71 | 0.57789 |
Target: 5'- -uCGAagAUCAUCuCUCGGGacaUCCACCCg -3' miRNA: 3'- uuGCUg-UAGUGG-GAGCCCa--AGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 18299 | 0.71 | 0.57789 |
Target: 5'- uACGGCAUC-CUC-CGGGaUUCCGCCg -3' miRNA: 3'- uUGCUGUAGuGGGaGCCC-AAGGUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 94289 | 0.72 | 0.536987 |
Target: 5'- cGCGACAccCAUCUUCGGG--CCGCCCc -3' miRNA: 3'- uUGCUGUa-GUGGGAGCCCaaGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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