miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20598 5' -55.9 NC_004688.1 + 12732 0.68 0.752605
Target:  5'- aAGCGACG-CGCCCccucuuUCGGGcgggcgUCgCACCCc -3'
miRNA:   3'- -UUGCUGUaGUGGG------AGCCCa-----AG-GUGGG- -5'
20598 5' -55.9 NC_004688.1 + 18299 0.71 0.57789
Target:  5'- uACGGCAUC-CUC-CGGGaUUCCGCCg -3'
miRNA:   3'- uUGCUGUAGuGGGaGCCC-AAGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 18816 0.69 0.702434
Target:  5'- gGGCGAUGagAUCCgcgcCGGGggCCGCCCc -3'
miRNA:   3'- -UUGCUGUagUGGGa---GCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 18911 0.71 0.57789
Target:  5'- -uCGAagAUCAUCuCUCGGGacaUCCACCCg -3'
miRNA:   3'- uuGCUg-UAGUGG-GAGCCCa--AGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 23553 0.66 0.867271
Target:  5'- cACGGCcguUCAUCCUCcGGUaucggUUCGCCCc -3'
miRNA:   3'- uUGCUGu--AGUGGGAGcCCA-----AGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 46887 0.66 0.874761
Target:  5'- -uCGGCAUCcaGCgCUC-GGUUgCACCCg -3'
miRNA:   3'- uuGCUGUAG--UGgGAGcCCAAgGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 46925 0.66 0.859561
Target:  5'- cACGAUcgCGCCCccacacuggcCGGGgaCCGCCUc -3'
miRNA:   3'- uUGCUGuaGUGGGa---------GCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 53657 0.66 0.874761
Target:  5'- ---cGCAUCACCCgggCGGGgccagUCCuuAUCCu -3'
miRNA:   3'- uugcUGUAGUGGGa--GCCCa----AGG--UGGG- -5'
20598 5' -55.9 NC_004688.1 + 57186 0.68 0.751625
Target:  5'- cGACGACGgagaacguuuccuUCuggGCCUgCGGG-UCCGCCCa -3'
miRNA:   3'- -UUGCUGU-------------AG---UGGGaGCCCaAGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 71819 0.66 0.874761
Target:  5'- -cCGcACcugCACCgCUCGGGUuaucUCCGCCa -3'
miRNA:   3'- uuGC-UGua-GUGG-GAGCCCA----AGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 77515 0.69 0.702434
Target:  5'- cACGGCAcaUCGCCCgagCGGGU--CACCg -3'
miRNA:   3'- uUGCUGU--AGUGGGa--GCCCAagGUGGg -5'
20598 5' -55.9 NC_004688.1 + 80072 0.69 0.687027
Target:  5'- gAACGGCAgcucgccgaagcCGCCCUCGGGcgUcagaacaagauaggCCACCCc -3'
miRNA:   3'- -UUGCUGUa-----------GUGGGAGCCCa-A--------------GGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 80977 0.67 0.817951
Target:  5'- gGGCGuAC-UCACCCuUCGGGUUCaagaauggCGCCa -3'
miRNA:   3'- -UUGC-UGuAGUGGG-AGCCCAAG--------GUGGg -5'
20598 5' -55.9 NC_004688.1 + 81155 0.67 0.826656
Target:  5'- cAGCGGguCGUUGCCCggcUGGGgaUCACCCg -3'
miRNA:   3'- -UUGCU--GUAGUGGGa--GCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 83289 0.7 0.640294
Target:  5'- uGACGACAguguucugcucgUCGCCCgaCGGGgUCCagcggGCCCg -3'
miRNA:   3'- -UUGCUGU------------AGUGGGa-GCCCaAGG-----UGGG- -5'
20598 5' -55.9 NC_004688.1 + 85109 0.68 0.741761
Target:  5'- cGACGACcucguUCGCCCcgccggggccgccUUGGGggCCGCCg -3'
miRNA:   3'- -UUGCUGu----AGUGGG-------------AGCCCaaGGUGGg -5'
20598 5' -55.9 NC_004688.1 + 85520 0.69 0.681867
Target:  5'- cGugGACGUgAUCCUCGuGGUUCUGCg- -3'
miRNA:   3'- -UugCUGUAgUGGGAGC-CCAAGGUGgg -5'
20598 5' -55.9 NC_004688.1 + 86617 0.66 0.851637
Target:  5'- uGCGGCc-CGCgUUCGGGUUCCAgCg -3'
miRNA:   3'- uUGCUGuaGUGgGAGCCCAAGGUgGg -5'
20598 5' -55.9 NC_004688.1 + 93094 0.71 0.588234
Target:  5'- --aGcCAUCACUCaccuuUCGGGggCCGCCCg -3'
miRNA:   3'- uugCuGUAGUGGG-----AGCCCaaGGUGGG- -5'
20598 5' -55.9 NC_004688.1 + 93173 0.66 0.835178
Target:  5'- cAACGGCG-CGCuCCaCGGGUUCCGgCg -3'
miRNA:   3'- -UUGCUGUaGUG-GGaGCCCAAGGUgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.