Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20598 | 5' | -55.9 | NC_004688.1 | + | 46887 | 0.66 | 0.874761 |
Target: 5'- -uCGGCAUCcaGCgCUC-GGUUgCACCCg -3' miRNA: 3'- uuGCUGUAG--UGgGAGcCCAAgGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 85109 | 0.68 | 0.741761 |
Target: 5'- cGACGACcucguUCGCCCcgccggggccgccUUGGGggCCGCCg -3' miRNA: 3'- -UUGCUGu----AGUGGG-------------AGCCCaaGGUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 57186 | 0.68 | 0.751625 |
Target: 5'- cGACGACGgagaacguuuccuUCuggGCCUgCGGG-UCCGCCCa -3' miRNA: 3'- -UUGCUGU-------------AG---UGGGaGCCCaAGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 104878 | 0.68 | 0.752605 |
Target: 5'- ---aACAUCACCCUcgcgccCGGGUUggGCCCg -3' miRNA: 3'- uugcUGUAGUGGGA------GCCCAAggUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 99019 | 0.68 | 0.752605 |
Target: 5'- uAGCGACAg-AUCUUCGGGggcCCGCCa -3' miRNA: 3'- -UUGCUGUagUGGGAGCCCaa-GGUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 12732 | 0.68 | 0.752605 |
Target: 5'- aAGCGACG-CGCCCccucuuUCGGGcgggcgUCgCACCCc -3' miRNA: 3'- -UUGCUGUaGUGGG------AGCCCa-----AG-GUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 102473 | 0.67 | 0.777682 |
Target: 5'- -gUGaAUAUCGCCCUCGGGgauugguggcgcgUCUuCCCa -3' miRNA: 3'- uuGC-UGUAGUGGGAGCCCa------------AGGuGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 80977 | 0.67 | 0.817951 |
Target: 5'- gGGCGuAC-UCACCCuUCGGGUUCaagaauggCGCCa -3' miRNA: 3'- -UUGC-UGuAGUGGG-AGCCCAAG--------GUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 98963 | 0.67 | 0.817951 |
Target: 5'- -uCGGCAgccggugguacUCAUCCUCGGuGUUgugauccucgacCCACCCc -3' miRNA: 3'- uuGCUGU-----------AGUGGGAGCC-CAA------------GGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 105966 | 0.69 | 0.702434 |
Target: 5'- -uCGACcaaAUCGCCCaUGGuGgUCCACCCg -3' miRNA: 3'- uuGCUG---UAGUGGGaGCC-CaAGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 77515 | 0.69 | 0.702434 |
Target: 5'- cACGGCAcaUCGCCCgagCGGGU--CACCg -3' miRNA: 3'- uUGCUGU--AGUGGGa--GCCCAagGUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 18816 | 0.69 | 0.702434 |
Target: 5'- gGGCGAUGagAUCCgcgcCGGGggCCGCCCc -3' miRNA: 3'- -UUGCUGUagUGGGa---GCCCaaGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 18299 | 0.71 | 0.57789 |
Target: 5'- uACGGCAUC-CUC-CGGGaUUCCGCCg -3' miRNA: 3'- uUGCUGUAGuGGGaGCCC-AAGGUGGg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 18911 | 0.71 | 0.57789 |
Target: 5'- -uCGAagAUCAUCuCUCGGGacaUCCACCCg -3' miRNA: 3'- uuGCUg-UAGUGG-GAGCCCa--AGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 101139 | 0.71 | 0.57789 |
Target: 5'- cGGCGACggucaguucGUCGgCCUCGGGgucgaCGCCCa -3' miRNA: 3'- -UUGCUG---------UAGUgGGAGCCCaag--GUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 93094 | 0.71 | 0.588234 |
Target: 5'- --aGcCAUCACUCaccuuUCGGGggCCGCCCg -3' miRNA: 3'- uugCuGUAGUGGG-----AGCCCaaGGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 83289 | 0.7 | 0.640294 |
Target: 5'- uGACGACAguguucugcucgUCGCCCgaCGGGgUCCagcggGCCCg -3' miRNA: 3'- -UUGCUGU------------AGUGGGa-GCCCaAGG-----UGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 85520 | 0.69 | 0.681867 |
Target: 5'- cGugGACGUgAUCCUCGuGGUUCUGCg- -3' miRNA: 3'- -UugCUGUAgUGGGAGC-CCAAGGUGgg -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 80072 | 0.69 | 0.687027 |
Target: 5'- gAACGGCAgcucgccgaagcCGCCCUCGGGcgUcagaacaagauaggCCACCCc -3' miRNA: 3'- -UUGCUGUa-----------GUGGGAGCCCa-A--------------GGUGGG- -5' |
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20598 | 5' | -55.9 | NC_004688.1 | + | 108445 | 0.69 | 0.692176 |
Target: 5'- cGCGGCAUCACa---GGGcgCCACUCg -3' miRNA: 3'- uUGCUGUAGUGggagCCCaaGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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