miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
206 5' -52.1 AC_000007.1 + 2240 0.67 0.661898
Target:  5'- uUCCAu--GGGcuCUGCucCUGCCGCCg -3'
miRNA:   3'- -GGGUuuuUCUucGACGucGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 16948 0.68 0.650232
Target:  5'- gCCCGu---GAcaCUGCAGCagUGCUGCCc -3'
miRNA:   3'- -GGGUuuuuCUucGACGUCG--ACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 16309 0.68 0.638545
Target:  5'- cCCCAGGuccAGGCgacgaGCGGCcGCCGCa -3'
miRNA:   3'- -GGGUUUuucUUCGa----CGUCGaCGGCGg -5'
206 5' -52.1 AC_000007.1 + 12752 0.68 0.638545
Target:  5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCg -3'
miRNA:   3'- gGGUuuUUC---UUCGACGu--CGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 14032 0.68 0.638545
Target:  5'- uCCCAAAuccAGGAcGCUGCuGUcGuCUGCCg -3'
miRNA:   3'- -GGGUUU---UUCUuCGACGuCGaC-GGCGG- -5'
206 5' -52.1 AC_000007.1 + 23966 0.68 0.638545
Target:  5'- cCCCAAAAAGcGGCUGaGGC-GgCGUCu -3'
miRNA:   3'- -GGGUUUUUCuUCGACgUCGaCgGCGG- -5'
206 5' -52.1 AC_000007.1 + 8613 0.68 0.638545
Target:  5'- aCCCGccGGGAGAGGggGCAGggGCaCGUCg -3'
miRNA:   3'- -GGGU--UUUUCUUCgaCGUCgaCG-GCGG- -5'
206 5' -52.1 AC_000007.1 + 13647 0.68 0.626853
Target:  5'- gUCCGAucuAGgcGCUGCGGCc-CCGCg -3'
miRNA:   3'- -GGGUUuu-UCuuCGACGUCGacGGCGg -5'
206 5' -52.1 AC_000007.1 + 15162 0.68 0.624515
Target:  5'- aCCGGcugcauuGCcGCGGCUGCCGCg -3'
miRNA:   3'- gGGUUuuucuu-CGaCGUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 12675 0.68 0.615166
Target:  5'- gUCCAGGuu--GGuCUGCAcGUUGCCGCUg -3'
miRNA:   3'- -GGGUUUuucuUC-GACGU-CGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 15278 0.69 0.591853
Target:  5'- cCUCGGGuugcgcagcGGggGCgGCAGCuucUGCCGCUg -3'
miRNA:   3'- -GGGUUUu--------UCuuCGaCGUCG---ACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 10763 0.69 0.557195
Target:  5'- uUCCuuccAGgcGCgGCGGCUGCUGCg -3'
miRNA:   3'- -GGGuuuuUCuuCGaCGUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 26904 0.69 0.557195
Target:  5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCg -3'
miRNA:   3'- gGGUUUuucuUCG-----------ACGuCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 23463 0.69 0.557195
Target:  5'- aCCAAGuGGAAGCUcUGGCgGCCGUa -3'
miRNA:   3'- gGGUUUuUCUUCGAcGUCGaCGGCGg -5'
206 5' -52.1 AC_000007.1 + 24986 0.69 0.553758
Target:  5'- aCCGAGGAGGgccuacccgcaguuGGCgaugaGCAGCUGgCGCg -3'
miRNA:   3'- gGGUUUUUCU--------------UCGa----CGUCGACgGCGg -5'
206 5' -52.1 AC_000007.1 + 28880 0.69 0.545765
Target:  5'- aCCUuuuuGGcAGcGCUGCAGaCUGCCGCa -3'
miRNA:   3'- -GGGuuuuUC-UU-CGACGUC-GACGGCGg -5'
206 5' -52.1 AC_000007.1 + 10325 0.7 0.534411
Target:  5'- aCCAAAAAGugcGGCgGCGGCUGgCGgUa -3'
miRNA:   3'- gGGUUUUUCu--UCGaCGUCGACgGCgG- -5'
206 5' -52.1 AC_000007.1 + 28811 0.7 0.500888
Target:  5'- gCCCuuGcGGcAGuCUGCAGC-GCUGCCa -3'
miRNA:   3'- -GGGuuUuUCuUC-GACGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 12390 0.7 0.489919
Target:  5'- gCCGGAcGGcuGGCucUGCAGC-GCCGCCc -3'
miRNA:   3'- gGGUUUuUCu-UCG--ACGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 2158 0.7 0.489919
Target:  5'- -gCAGGAGGAAGCcagGCGGCgGCgGCg -3'
miRNA:   3'- ggGUUUUUCUUCGa--CGUCGaCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.