miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2060 3' -48.6 NC_001348.1 + 91591 0.66 0.998424
Target:  5'- -gGGACGCgGgccggauaucuACCGUCU-UCAAacaGCCUg -3'
miRNA:   3'- uaUCUGCGgU-----------UGGCAGAaAGUU---UGGG- -5'
2060 3' -48.6 NC_001348.1 + 42830 0.66 0.998424
Target:  5'- -cAGAgCGCCGAUCaGUCUgcUUUAcaacAGCCCg -3'
miRNA:   3'- uaUCU-GCGGUUGG-CAGA--AAGU----UUGGG- -5'
2060 3' -48.6 NC_001348.1 + 100919 0.66 0.998424
Target:  5'- uUAGAauaCAAUCGUCUUUUAAAUUCa -3'
miRNA:   3'- uAUCUgcgGUUGGCAGAAAGUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 16970 0.66 0.998096
Target:  5'- uGUGGACGCCAGgguaUGUCgccaucUCAAACUUc -3'
miRNA:   3'- -UAUCUGCGGUUg---GCAGaa----AGUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 46266 0.66 0.997712
Target:  5'- -cAGaACGCCAuGCCG-CcgUCAAACCa -3'
miRNA:   3'- uaUC-UGCGGU-UGGCaGaaAGUUUGGg -5'
2060 3' -48.6 NC_001348.1 + 8990 0.66 0.997712
Target:  5'- gGUGGAUGUUAcuacggaugauAUUGUCgaUCAAACCCu -3'
miRNA:   3'- -UAUCUGCGGU-----------UGGCAGaaAGUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 106565 0.66 0.997266
Target:  5'- -gGGugGaCCaAACCGUCggUCuccuccGCCCg -3'
miRNA:   3'- uaUCugC-GG-UUGGCAGaaAGuu----UGGG- -5'
2060 3' -48.6 NC_001348.1 + 79089 0.66 0.997266
Target:  5'- -aGGACGCCAucaaaggaACCGUUauugaUCGGAUCUg -3'
miRNA:   3'- uaUCUGCGGU--------UGGCAGaa---AGUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 123227 0.66 0.997266
Target:  5'- -gGGugGaCCaAACCGUCggUCuccuccGCCCg -3'
miRNA:   3'- uaUCugC-GG-UUGGCAGaaAGuu----UGGG- -5'
2060 3' -48.6 NC_001348.1 + 91456 0.66 0.99675
Target:  5'- --uGugGCCAguaACCGguaUUCAGGCCUu -3'
miRNA:   3'- uauCugCGGU---UGGCagaAAGUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 107342 0.67 0.995474
Target:  5'- --cGugGCUAugaGCCGUCgauacgacCGGGCCCa -3'
miRNA:   3'- uauCugCGGU---UGGCAGaaa-----GUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 105034 0.67 0.995474
Target:  5'- -aGGAgGCCAGCCcUCUcgCGGcCCCc -3'
miRNA:   3'- uaUCUgCGGUUGGcAGAaaGUUuGGG- -5'
2060 3' -48.6 NC_001348.1 + 122450 0.67 0.995474
Target:  5'- --cGugGCUAugaGCCGUCgauacgacCGGGCCCa -3'
miRNA:   3'- uauCugCGGU---UGGCAGaaa-----GUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 47824 0.67 0.994698
Target:  5'- aAUAGACggGCCAuGCCGUCUgggauGGCCg -3'
miRNA:   3'- -UAUCUG--CGGU-UGGCAGAaagu-UUGGg -5'
2060 3' -48.6 NC_001348.1 + 48348 0.68 0.9858
Target:  5'- -----aGCCAACCaGUCUUUUAAaagaacACCCa -3'
miRNA:   3'- uaucugCGGUUGG-CAGAAAGUU------UGGG- -5'
2060 3' -48.6 NC_001348.1 + 8040 0.7 0.972718
Target:  5'- uAUGGAUGCUcGCCGUUUugguauauuguucgaUUUGGACCCu -3'
miRNA:   3'- -UAUCUGCGGuUGGCAGA---------------AAGUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 508 0.71 0.949056
Target:  5'- cGUGGuCGCCAuuguuGCCGUUUUUCccgagGAACCUc -3'
miRNA:   3'- -UAUCuGCGGU-----UGGCAGAAAG-----UUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 123567 0.72 0.93324
Target:  5'- -cGGACGCCcaGGCCGUCguccgauggcCAGACUCg -3'
miRNA:   3'- uaUCUGCGG--UUGGCAGaaa-------GUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 106225 0.72 0.93324
Target:  5'- -cGGACGCCcaGGCCGUCguccgauggcCAGACUCg -3'
miRNA:   3'- uaUCUGCGG--UUGGCAGaaa-------GUUUGGG- -5'
2060 3' -48.6 NC_001348.1 + 51408 0.72 0.928851
Target:  5'- --cGAUGUUAACCGUCUggUAcccGACCCa -3'
miRNA:   3'- uauCUGCGGUUGGCAGAaaGU---UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.