miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20601 3' -51.5 NC_004688.1 + 42616 0.66 0.980977
Target:  5'- aACGAUUucccaGAAGAggccagaucgcucGCCAgCGAGuCCGGCa -3'
miRNA:   3'- -UGCUGA-----UUUUU-------------UGGUgGCUC-GGCCGc -5'
20601 3' -51.5 NC_004688.1 + 63811 0.66 0.980533
Target:  5'- uACGaggaGCUGGAAAAagcccucgcgggauUCAUCGAGUCGGCu -3'
miRNA:   3'- -UGC----UGAUUUUUU--------------GGUGGCUCGGCCGc -5'
20601 3' -51.5 NC_004688.1 + 63518 0.66 0.978918
Target:  5'- cACGACgugggcGCCGCCGcAGCCGaaGCc -3'
miRNA:   3'- -UGCUGauuuuuUGGUGGC-UCGGC--CGc -5'
20601 3' -51.5 NC_004688.1 + 2469 0.66 0.978679
Target:  5'- -gGACUGcGAAaguguucgaacaaGCguUCGAGCCGGCa -3'
miRNA:   3'- ugCUGAUuUUU-------------UGguGGCUCGGCCGc -5'
20601 3' -51.5 NC_004688.1 + 15349 0.66 0.976441
Target:  5'- gGCGGCc-AGGGGCCGCCGGagUGGCGc -3'
miRNA:   3'- -UGCUGauUUUUUGGUGGCUcgGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 103455 0.66 0.976441
Target:  5'- -aGGCgu-AGAACgCGCCGAGCgucaUGGCGc -3'
miRNA:   3'- ugCUGauuUUUUG-GUGGCUCG----GCCGC- -5'
20601 3' -51.5 NC_004688.1 + 18928 0.66 0.975921
Target:  5'- -gGACauccac-CCGCgCGAGCCGGUGa -3'
miRNA:   3'- ugCUGauuuuuuGGUG-GCUCGGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 68868 0.66 0.973757
Target:  5'- gGCGGCgGGGucGCCGguCCGgacguagugguAGCCGGCGa -3'
miRNA:   3'- -UGCUGaUUUuuUGGU--GGC-----------UCGGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 14022 0.66 0.970858
Target:  5'- -aGGCUugaauGAAGCaCACCaGGUCGGCGu -3'
miRNA:   3'- ugCUGAuu---UUUUG-GUGGcUCGGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 90806 0.66 0.970251
Target:  5'- uCGGCcuuuuccuGACCACUGGGgCGGCa -3'
miRNA:   3'- uGCUGauuuu---UUGGUGGCUCgGCCGc -5'
20601 3' -51.5 NC_004688.1 + 7363 0.66 0.967736
Target:  5'- cCGGCUAcgugGAGAgcGCCGCCGAGaCCauccGCGa -3'
miRNA:   3'- uGCUGAU----UUUU--UGGUGGCUC-GGc---CGC- -5'
20601 3' -51.5 NC_004688.1 + 57660 0.67 0.964384
Target:  5'- -gGGCUAc-GGACCGCgGuacgcccgcaucGGCCGGCGa -3'
miRNA:   3'- ugCUGAUuuUUUGGUGgC------------UCGGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 100829 0.67 0.960796
Target:  5'- gGCGACUGcuucAACCGCC--GCCGcGCGc -3'
miRNA:   3'- -UGCUGAUuuu-UUGGUGGcuCGGC-CGC- -5'
20601 3' -51.5 NC_004688.1 + 61044 0.67 0.956965
Target:  5'- aGCGACccu--GACCACUGgAGCCauGGCa -3'
miRNA:   3'- -UGCUGauuuuUUGGUGGC-UCGG--CCGc -5'
20601 3' -51.5 NC_004688.1 + 95991 0.67 0.952887
Target:  5'- -aGACUu----GCCGCCGGGCCagaggaGGCu -3'
miRNA:   3'- ugCUGAuuuuuUGGUGGCUCGG------CCGc -5'
20601 3' -51.5 NC_004688.1 + 51560 0.67 0.952887
Target:  5'- cCGACgcGAugGCCGCC--GCCGGCu -3'
miRNA:   3'- uGCUGauUUuuUGGUGGcuCGGCCGc -5'
20601 3' -51.5 NC_004688.1 + 10992 0.67 0.948556
Target:  5'- cUGGCUAAGAuGCCGCaucuGCUGGUGg -3'
miRNA:   3'- uGCUGAUUUUuUGGUGgcu-CGGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 11746 0.67 0.948556
Target:  5'- uCGACcaguUGAucGAGACCGCCGAaaUGGCGg -3'
miRNA:   3'- uGCUG----AUU--UUUUGGUGGCUcgGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 96135 0.67 0.948556
Target:  5'- cGCGACacccaAGAAGGCU-CCGcGGCCGGUGa -3'
miRNA:   3'- -UGCUGa----UUUUUUGGuGGC-UCGGCCGC- -5'
20601 3' -51.5 NC_004688.1 + 44100 0.68 0.943969
Target:  5'- uAUGACgu---AGCCGCCGAGCgcauuaGGCu -3'
miRNA:   3'- -UGCUGauuuuUUGGUGGCUCGg-----CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.