Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 104279 | 0.66 | 0.478056 |
|
Target: 5'- -aCGUGgaugcgGCCGuCGGUGCaGCGCUGg- -3' miRNA: 3'- aaGUACa-----CGGC-GCCGCGcCGCGGCaa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 12169 | 0.66 | 0.450232 |
|
Target: 5'- gUCAaGUGCCaGCGGUGCGGauaucccauCGCCu-- -3' miRNA: 3'- aAGUaCACGG-CGCCGCGCC---------GCGGcaa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 93917 | 0.66 | 0.441157 |
|
Target: 5'- gUUCGgg-GCCGCuGGCGggcuucaacaCGGCGCCGg- -3' miRNA: 3'- -AAGUacaCGGCG-CCGC----------GCCGCGGCaa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 98797 | 0.67 | 0.432186 |
|
Target: 5'- cUCG-GUGUCGCGGCGCuGuaGUCGUa -3' miRNA: 3'- aAGUaCACGGCGCCGCG-CcgCGGCAa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 92655 | 0.67 | 0.405927 |
|
Target: 5'- gUgAUGggGcCCGUGGCGcCGGUGCCGa- -3' miRNA: 3'- aAgUACa-C-GGCGCCGC-GCCGCGGCaa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 19524 | 0.7 | 0.28398 |
|
Target: 5'- aUCugcuUGcUGCCGCGGCGCcaGGCGCaGUg -3' miRNA: 3'- aAGu---AC-ACGGCGCCGCG--CCGCGgCAa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 33648 | 0.7 | 0.28398 |
|
Target: 5'- cUCGUG-GgCGCGGUaucggacgaugGCGGCGCCGa- -3' miRNA: 3'- aAGUACaCgGCGCCG-----------CGCCGCGGCaa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 99467 | 0.7 | 0.28398 |
|
Target: 5'- gUCG-GUGCCGuCaGCGCGGUGCCa-- -3' miRNA: 3'- aAGUaCACGGC-GcCGCGCCGCGGcaa -5' |
|||||||
| 20603 | 5' | -62.7 | NC_004688.1 | + | 64803 | 0.72 | 0.19773 |
|
Target: 5'- ----cGUGCCGCGGCG-GG-GCCGUUa -3' miRNA: 3'- aaguaCACGGCGCCGCgCCgCGGCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home